Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq2 219 1e-52 seq4 143 8e-30 >seq2 Length=61504503 Score = 219 bits (242), Expect = 1e-52 Identities = 329/463 (71%), Gaps = 7/463 (2%) Strand=Plus/Minus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || ||||| ||||| ||||| | || ||||| || || | ||||| ||| Sbjct 2078334 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 2078275 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 |||| | | || ||| || ||||| |||| || ||||| || || || |||||| Sbjct 2078274 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGAT 2078215 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || |||||||| ||||| || || ||| | || |||||||||||||| ||| Sbjct 2078214 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCT 2078155 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || || | |||| | || || || ||| |||||||||| || || |||||||| Sbjct 2078154 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 2078095 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | || | ||||||||||||||||| ||||| || ||| | || |||| | |||||| Sbjct 2078094 GCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTC 2078035 Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658 ||| | || ||||| || ||| | |||||||||| || | | | || ||| Sbjct 2078034 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 2077975 Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718 | || ||||| || |||||| |||| || | |||| ||| |||||| ||||| Sbjct 2077974 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTT 2077916 Query 19719 G-TTTACCC-AT----TTGGGCAAGGGAGTTTTAGTGATGGTA 19755 | || |||| || |||| ||||| |||||| ||||| || Sbjct 2077915 GATTGACCCTATTCTATTGGTCAAGGAAGTTTTTCTGATGCTA 2077873 >seq4 Length=49548238 Score = 143 bits (158), Expect = 8e-30 Identities = 226/320 (71%), Gaps = 3/320 (1%) Strand=Plus/Plus Query 19443 TCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAAT 19502 || || || ||| | || |||||||||||||| ||||| || | |||| | || Sbjct 24272522 TCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCA 24272581 Query 19503 GCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATAC 19562 || || ||| |||||||||| || || |||||||| | || | ||||||||||||||| Sbjct 24272582 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 24272641 Query 19563 AACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCT 19622 || ||||| || ||| | || |||| | ||||||||| | || ||||| || Sbjct 24272642 AATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 24272701 Query 19623 GGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATAT 19682 ||| |||||||||| || | | | || ||| | || ||||| || |||||| Sbjct 24272702 GGTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 24272761 Query 19683 ACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAG 19741 |||| || | |||| ||| |||||| ||||| | || |||| |||| ||||| || Sbjct 24272762 TCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATTGACCCTATTGGTCAAGGAAG 24272820 Query 19742 TTTTAGTGATGGTAT-GCCT 19760 |||| ||||| ||| |||| Sbjct 24272821 TTTTTCTGATGCTATAGCCT 24272840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144427555582128