Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq2 185 1e-41 seq4 123 3e-23 seq8 86.0 7e-12 >seq2 Length=61504503 Score = 185 bits (204), Expect = 1e-41 Identities = 286/405 (71%), Gaps = 5/405 (1%) Strand=Plus/Minus Query 170675 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 170734 ||| |||| ||| || || || | ||| | || ||||| ||||| || |||||||| Sbjct 2078334 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC- 2078276 Query 170735 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 170793 | ||| | || || || || || ||| | || ||||||||||| |||||||| || Sbjct 2078275 TACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGA 2078216 Query 170794 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 170853 ||| || || || | || || ||| | |||||||| | ||||| ||||| || ||||| Sbjct 2078215 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTC 2078156 Query 170854 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 170913 |||||| | |||| |||| || || ||||| ||||| || || || |||||||| Sbjct 2078155 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 2078096 Query 170914 AGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 170973 || || | || |||||||| ||||| || || ||||| || || || || | ||||| Sbjct 2078095 TGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTT 2078036 Query 170974 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAAT 171033 | | |||| | || || |||||| | |||||||||| | | | || || || Sbjct 2078035 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 2077976 Query 171034 GAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGC 171078 | | |||||||| ||| ||||| ||||| ||||| |||||| Sbjct 2077975 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGT---TGCAGC 2077934 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | || || |||||| || || |||||||| || || |||||||| || Sbjct 2076789 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGC 2076848 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || || || ||||||||||| | || | || |||||||| ||| |||||||| Sbjct 2076849 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 2076908 Query 171915 GTGACCTCATGGTACACACATGGTATTG 171942 || || || ||||| || ||||| |||| Sbjct 2076909 GTAACTTCTTGGTATACCCATGG-ATTG 2076935 >seq4 Length=49548238 Score = 123 bits (136), Expect = 3e-23 Identities = 182/257 (71%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 170822 GGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCA 170881 |||||||| | ||||| ||||| || ||||||||||| | |||| |||| || Sbjct 24272525 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCG 24272584 Query 170882 ATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAAC 170941 || ||||| ||||| || || || |||||||| || || | || |||||||| ||||| Sbjct 24272585 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 24272644 Query 170942 GGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGT 171001 || || ||||| || || || || | |||||| | |||| | || || |||||| Sbjct 24272645 GGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 24272704 Query 171002 AGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCA 171061 |||||||||| | | | || || ||| | |||||||| ||| ||||| ||| Sbjct 24272705 CATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCA 24272764 Query 171062 GCACCTGTATCTGCAGC 171078 || ||||| |||||| Sbjct 24272765 GCTCCTGT---TGCAGC 24272778 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | || || |||||| || || | |||||| || || |||||||| || Sbjct 21863120 TTTGATATTATGGACGACTGGTTACGAAGGGACCTTTTCGTTTTTATAGGATGGTCCGGC 21863061 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAAT-CGGAGGTTGGTTCGTAGGAACTACTTT 171913 || || || || ||||||||||| | || | || |||||||| ||| |||||||| Sbjct 21863060 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAAGGGGGTTGGTTTACAGGGACTACTTT 21863001 Query 171914 CGTGACCTCATGGTACACACATGGTATTG 171942 || || || ||||| || ||||| |||| Sbjct 21863000 TGTAACTTCTTGGTATACCCATGG-ATTG 21862973 >seq8 Length=47074253 Score = 86.0 bits (94), Expect = 7e-12 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 170686 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-A 170744 ||| || || || | ||| | || ||||| ||||| || |||||||| | ||| | | Sbjct 5860695 CACCGAAAACCGTCTTTACATCGGATGGTTAGGTGTTTTGATGATCCC-TACCTTATTGA 5860637 Query 170745 CTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAA 170804 | || || | || ||| | || |||||||||||||||||||| ||||| || || | Sbjct 5860636 CCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTA 5860577 Query 170805 TCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCT 170860 | | || || ||| |||||||| | ||||| || || || ||||||||||| Sbjct 5860576 TTCGTGAGCCTGTTTTTGGTTCTTTACTTTATGGAAATAATATTGTCTCTGGTGCT 5860521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570210432988320