Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 3e-14 seq9 93.3 1e-13 seq8 84.2 6e-11 seq5 84.2 6e-11 >seq1 Length=61571842 Score = 95.1 bits (104), Expect = 3e-14 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACT-TAAGAATTGTGCTCTTATTTC 363680 ||||| || ||| || ||||| || | ||| || || | ||||| ||||| || Sbjct 60058349 ATGAAAGATGATAGTATTGAGGGAATTTATGATACTCTCTCAGAAT-GTGCTGCGATAAG 60058407 Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACA 363739 ||| ||| || |||||||||||||| || ||||| |||| || || | ||||||| Sbjct 60058408 CAAATCTGCTGGAGGAATTGGTGTATCAATTCACAACATTCGAGCTACTG-GGAGTTACA 60058466 Query 363740 TTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 |||| || ||| ||| || ||||| | ||||| ||||| ||||| || | ||| Sbjct 60058467 TTCGAGGAACAAATGGAACTTCTAATGGAATTGTTCCTATGCTACGTGTTTTCAATGATA 60058526 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| | || || || || |||||||| ||| | ||||| Sbjct 60058527 CTGCTCGTTATGTTGATCAAGGTGGAGGCAAGAGAAAAGG 60058566 >seq9 Length=72259479 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 371100 GCACCATGACTAATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGT 371159 || ||||| ||| ||| ||||| | ||||| || |||| |||||||||||||| ||| Sbjct 9929386 GCTCCATGTGCAATCATGCAATCCCTTTCCATTTCTCCAAAGCGGAGACCACCATCACGT 9929445 Query 371160 GACCGTCCTTCTGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGGTTGCGTGCATGT 371219 || || || |||| ||| || || |||| ||| | ||| || | || |||| Sbjct 9929446 GAACGCCCCTCTGCTGGTTGCCGGGTGAGTATCTGAACAGGACCACGACCTCTTGAATGT 9929505 Query 371220 GACTTGTCAACTACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAATCATA 371279 |||||| | |||||||||||||| | || ||||| ||| | | |||||||||| Sbjct 9929506 ATCTTGTCGTCCACCATGTGCTTGAGTCTTTGGTAATATGTGGGACCCAGAAAAATCATA 9929565 Query 371280 G 371280 | Sbjct 9929566 G 9929566 >seq8 Length=47074253 Score = 84.2 bits (92), Expect = 6e-11 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 111465 GTTGGTCTTGTCG-ACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCG 111523 ||||| |||| || ||| || ||||||||||| || ||||||||||||||||||||||| Sbjct 29220879 GTTGG-CTTGGCGCACAGGGAGGAAGGTGATCTAGGTCCAGTTTACGGATTTCAATGGCG 29220937 Query 111524 CCACTTTGGTGCAGACTA 111541 ||||||||||| || || Sbjct 29220938 ACACTTTGGTGCTGAGTA 29220955 >seq5 Length=59822759 Score = 84.2 bits (92), Expect = 6e-11 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| ||||| |||| ||| || || ||| | |||||| | || Sbjct 16576085 ATGAAAGATGACAGCATTGAGGGAATCTATGATACCCTGAAGGAATGTGCTGTCATAAGT 16576144 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || | || || |||||||||| || || |||||| ||||||| || | |||||||| Sbjct 16576145 AAATAAGCTGGATGAATTGGTGTCTCAATTCACAATATTCGTGCTACTGGG-AGTTACAT 16576203 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || ||| ||| || ||||| | ||||| ||| | ||||| || | |||| Sbjct 16576204 TCGAGGAACAAATGGAACATCCAATGGAATTGTTCCTATGTTACGTGTCTTCAATGATAC 16576263 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 || | || || || || ||||| || || | |||||| Sbjct 16576264 CGCTCGTTATGTTGATCAAGGTGGCGGCAAAAG-AAAGGG 16576302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303216866803016