Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq211 107 2e-18 seq7 107 2e-18 seq4 107 2e-18 seq1 107 2e-18 seq4347 98.7 9e-16 seq2 84.2 2e-11 >seq211 Length=21435 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| |||||||| ||||| | || || || |||| || | || || ||| || Sbjct 1055 AATGCAGATATTTGTGAAGACCCTCACTGGGAAGACCATAACTCTTGAGGTTGAGAGCTC 1114 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || || || || | ||||| | ||| |||||||| || || |||||||| Sbjct 1115 TGACACCATTGA--CAATGTCAAGGCAAAGATTCAG-GACAAAGAGGGAATCCCACCTGA 1171 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || |||||||| || || | || |||| || ||| ||| || || Sbjct 1172 CCAGCAGAGGCTCATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACTTTGGCTGACTA 1231 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || || || || || || || || || | || ||||||| Sbjct 1232 CAATATCCAGAAGGAGTCTACTCTTCACTTGGTCCTCCGCCTCCGAGGAGG 1282 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || | ||||| |||| || ||| ||| Sbjct 1284 ATGCAGATCTTTGTGAAGACACTTACTGGGAAGACTATCACGCTCGAGGTCGAGAGCTCT 1343 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| ||| ||| ||||| || || || ||||| |||| Sbjct 1344 GACACAATTGA--CAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCACCGGACC 1401 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| || || ||||| || || || | || |||| || || | | ||||||| Sbjct 1402 AGCAGCGAATCATCTTTGCTGGAAAGCAGCTGGAGGATGGGCGGACATTAGCTGATTACA 1461 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| || ||||| || || || || || || || | || ||||||| Sbjct 1462 ATATCCAGAAAGAGTCTACTCTTCACTTGGTCCTCCGCCTCCGAGGAGG 1510 >seq7 Length=46770411 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| |||||||| ||||| | || || || |||| || | || || ||| || Sbjct 21031516 AATGCAGATATTTGTGAAGACCCTCACTGGGAAGACCATAACTCTTGAGGTTGAGAGCTC 21031457 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || || || || | ||||| | ||| |||||||| || || |||||||| Sbjct 21031456 TGACACCATTGA--CAATGTCAAGGCAAAGATTCAG-GACAAAGAGGGAATCCCACCTGA 21031400 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || |||||||| || || | || |||| || ||| ||| || || Sbjct 21031399 CCAGCAGAGGCTCATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACTTTGGCTGACTA 21031340 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || || || || || || || || || | || ||||||| Sbjct 21031339 CAATATCCAGAAGGAGTCTACTCTTCACTTGGTCCTCCGCCTCCGAGGAGG 21031289 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || | ||||| |||| || ||| ||| Sbjct 21031287 ATGCAGATCTTTGTGAAGACACTTACTGGGAAGACTATCACGCTCGAGGTCGAGAGCTCT 21031228 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| ||| ||| ||||| || || || ||||| |||| Sbjct 21031227 GACACAATTGA--CAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCACCGGACC 21031170 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| || || ||||| || || || | || |||| || || | | ||||||| Sbjct 21031169 AGCAGCGAATCATCTTTGCTGGAAAGCAGCTGGAGGATGGGCGGACATTAGCTGATTACA 21031110 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| || ||||| || || || || || || || | || ||||||| Sbjct 21031109 ATATCCAGAAAGAGTCTACTCTTCACTTGGTCCTCCGCCTCCGAGGAGG 21031061 >seq4 Length=49548238 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || ||||||| | || || ||||| || Sbjct 2204868 ATGCAGATTTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCCTCG 2204927 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || || || || ||||| Sbjct 2204928 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 2204987 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| ||||||||||| || |||| |||| ||||| | | || ||||| Sbjct 2204988 CAGCGCCTTATCTTTGCCGGCAAGCAGCTAGAGGATGGCCGCACCCTTGCTGACTACAAC 2205047 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || | ||||| Sbjct 2205048 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCT 2205079 >seq1 Length=61571842 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || ||||||| | || |||||||| ||| Sbjct 2755924 ATGCAGATCTTTGTTAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCT 2755983 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || ||||| || ||||| Sbjct 2755984 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 2756043 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || ||||||||||| || | || |||| ||||| | | |||||||| Sbjct 2756044 CAGCGGCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGGCGCACGCTTGCTGATTACAAC 2756103 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||| || || | ||||| | || || ||||| Sbjct 2756104 ATCCAGAAGGAGAGCACTCTCCACCTGGTGCTCCGTCTTAGGGGAGG 2756150 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || ||||||| |||| |||||||| || Sbjct 3010105 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCCTCC 3010046 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 3010045 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 3009986 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | || |||| |||||| | | || ||||| Sbjct 3009985 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTGCAGACTACAAC 3009926 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||| || || | ||||| Sbjct 3009925 ATCCAGAAGGAGAGCACTCTCCACCTGGTGCT 3009894 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||||||| || ||||||| | || || ||| || Sbjct 2549820 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACTCTGGAGGTTGAGAGCTCC 2549761 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||| ||||| || || || |||| Sbjct 2549760 GACACCATCGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGACC 2549703 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || ||||||||||| || | || |||| ||||| | | || |||| Sbjct 2549702 AGCAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACACTTGCTGACTACA 2549643 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || || || ||||| || || | ||||| | || || ||||| Sbjct 2549642 ACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTTAGGGGAGG 2549594 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || ||||||| |||| |||||||| ||| Sbjct 3009877 ATGCAGATCTTTGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCCTCT 3009818 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 3009817 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 3009758 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | || || | ||||| | | || ||||| Sbjct 3009757 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGACGCACCCTTGCTGACTACAAC 3009698 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||| || || | ||||| Sbjct 3009697 ATCCAGAAGGAGAGCACCCTCCACCTGGTGCT 3009666 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || ||||||| | || |||||||| ||| Sbjct 3010333 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCT 3010274 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || || || || ||||| Sbjct 3010273 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 3010214 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | || || | ||||| | | ||| ||||| Sbjct 3010213 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTTGCCGACTACAAC 3010154 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||| || || | ||||| Sbjct 3010153 ATCCAGAAGGAGAGCACCCTCCACCTGGTGCT 3010122 >seq4347 Length=1781 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| |||| |||||||| || Sbjct 328 ATGCAGATCTTTGTTAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCCTCC 387 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 388 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 447 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | || |||| |||||| | | || ||||| Sbjct 448 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTGCGGACTACAAC 507 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||| || || | ||||| Sbjct 508 ATCCAGAAGGAGAGCACTCTTCACCTGGTGCT 539 >seq2 Length=61504503 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| |||||||| || || || |||||||| | || ||||||||||| || | || Sbjct 46523611 GACAAGGAAGGGATCCCTCCGGATCAACAGCGCCTGATATTTGCCGGCAAGCAGCTGGAG 46523670 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||||| ||| || ||||| ||||| || || || || || || || || || Sbjct 46523671 GATGGACGCACACTGGCTGACTACAACATTCAGAAGGAGTCAACTCTTCACTTGGTCCTC 46523730 Query 25212 AGGCTAAGAGGAGG 25225 ||||| || || || Sbjct 46523731 AGGCTCAGGGGTGG 46523744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433284757657220