Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq2 206 3e-48 seq4 140 4e-28 seq8 84.2 2e-11 >seq2 Length=61504503 Score = 206 bits (228), Expect = 3e-48 Identities = 330/471 (70%), Gaps = 7/471 (1%) Strand=Plus/Minus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 ||||||| | ||| | || ||| | ||||||||||| | || ||||| || | Sbjct 2078344 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 2078285 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171 |||||| || || | ||| | ||||| ||||| || || |||||||| | || || | Sbjct 2078284 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCC 2078226 Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231 |||| || ||||| ||||| || |||||||| || | || ||| || | ||||| |||| Sbjct 2078225 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 2078166 Query 166232 ACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCA 166291 | || ||||||||||| || | || | || || || || | ||||| || || | Sbjct 2078165 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 2078106 Query 166292 TCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAG 166351 | |||||||| ||||| ||||||| ||| | || || || || |||| |||| | | Sbjct 2078105 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 2078046 Query 166352 TCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACC 166411 | | |||||| | | || | | || ||||||||||| |||||| | || || Sbjct 2078045 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 2077986 Query 166412 GCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCG 166471 | || |||||||||||||||||| || ||||| || || ||||||||||| || | | Sbjct 2077985 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 2077926 Query 166472 CAGTCTTCCTGGT-----CTATCCTTTCGGTCAAGGTTCTTTCTCTGACGC 166517 | || ||| || | |||| || | |||||||| ||| ||||| || Sbjct 2077925 CTGTTTTCTTGATTGACCCTATTCTATTGGTCAAGGAAGTTTTTCTGATGC 2077875 >seq4 Length=49548238 Score = 140 bits (154), Expect = 4e-28 Identities = 220/313 (70%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 166210 GGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC--CTCCTCCAACG 166267 || ||| || | ||||| ||||| || ||||||||||| || | || || || || || Sbjct 24272525 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCG 24272584 Query 166268 CAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATA 166327 || || | ||||| || || || |||||||| ||||| ||||||| ||| | || | Sbjct 24272585 --ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 24272642 Query 166328 ACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGG 166387 | || || |||| |||| | || | |||||| | | || | | || |||| Sbjct 24272643 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGG 24272702 Query 166388 GTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACT 166447 ||| ||| |||||| | || ||| || |||||||||||||||||| || ||||| | Sbjct 24272703 GTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 24272762 Query 166448 CTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTT 166507 | || ||||||||||| || | || || ||| || | | ||| | |||||||| || Sbjct 24272763 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTT 24272822 Query 166508 TCTCTGACGCAAT 166520 | ||||| || || Sbjct 24272823 TTTCTGATGCTAT 24272835 >seq8 Length=47074253 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 166075 ACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCA 166134 ||| | ||||||||||| | || ||||| || ||||||| || || | ||| | Sbjct 5860694 ACCGAAAACCGTCTTTACATCGGATGGTTAGGTGTTTTGATGATCCCTACCTTATTGACC 5860635 Query 166135 GCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGAT 166193 ||||| || || || || |||| ||| | || || ||||| || ||||| ||||| || Sbjct 5860634 GCAACT-TCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTAT 5860576 Query 166194 CCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTT 166251 |||||||| || || ||| || | ||||| || || || ||||||||||| || Sbjct 5860575 TCGTGAGCCTGTTTTTGGTTCTTTACTTTATGGAAATAATATTGTCTCTGGTGCTATT 5860518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567173943804800