Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4 129 1e-24 seq7 123 5e-23 seq6 95.1 2e-14 seq9 93.3 9e-14 seq5 93.3 9e-14 seq3 93.3 9e-14 seq2 93.3 9e-14 seq8 91.5 3e-13 >seq4 Length=49548238 Score = 129 bits (142), Expect = 1e-24 Identities = 397/608 (65%), Gaps = 6/608 (1%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| |||||||| ||||||||||||| | | Sbjct 42841992 TCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAAGGGGTTGGCG 42842051 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || |||||| ||| || || || | || | |||||| || || ||||| | Sbjct 42842052 GCGTTGTACATCTTCCTGCACCCGAGCGCCATGAGCAGGCGGTCGGCGACGAACTCGATG 42842111 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || | ||||||||| | | |||| ||| || || |||| Sbjct 42842112 TACTGGCTCATGAGGGCGCCGTTCATGCCGACGAGCGCGACGGGGAGC-GCGTCGCAGAC 42842170 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| || ||| || | || || || | || || | || | ||| || Sbjct 42842171 GAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCGGACGCGGGCCTCGTCGAG 42842230 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||| | || ||| ||||| | | || | |||||| ||||||||||| Sbjct 42842231 CTTGCTGCGGAGGAGGTCGTAGAGGAGGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCG 42842290 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 ||||| ||||||||| | ||||| ||||| | || || ||| |||||||||| Sbjct 42842291 GGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAA 42842350 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981 ||| ||||| ||||| || ||||| | | ||||| || || | | || || ||||| Sbjct 42842351 GATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCAACGCAGGCGAAGGCGACGAGGCG 42842410 Query 251982 CTCAGCAAACGACTTGTCCTGCGACAA--GAACTTCTGTGCCCATGCTGCCTTCTTTCCA 252039 ||| || || || | || || | | | | || ||||| | ||||| | Sbjct 42842411 CTCGGCGAAGCGCTCG-CCGCCGTCGATCCAGCGCATG-GCCCAGTCGGCCTTGCGGCGG 42842468 Query 252040 ACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGATG 252099 || ||||| | || ||||| || ||||| || | |||||| |||| |||| Sbjct 42842469 ACGGCGGGCACGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTCGGCGCCGTCGCGGATG 42842528 Query 252100 AGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTAA 252159 | || ||||| || |||||||||||||| |||||| ||| || |||||| | Sbjct 42842529 TAGGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAG 42842588 Query 252160 GCATAGAA 252167 | ||||| Sbjct 42842589 CCGTAGAA 42842596 >seq7 Length=46770411 Score = 123 bits (136), Expect = 5e-23 Identities = 534/825 (65%), Gaps = 32/825 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| |||||||| ||||||||||||| | | Sbjct 35944363 TCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAAGGGGTTGGCG 35944422 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | || ||| ||| ||||| || || | || | |||||| || || ||||| | Sbjct 35944423 ACGTTATACATCTTCTTGTGGCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTCGATG 35944482 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || | |||||| || | | |||| ||| || || |||| Sbjct 35944483 TACTGGCTCATGAGGCCGCCGTTCATTCCGACGAGCGCGACGGGGAGC-GCGTCGCAGAC 35944541 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGAC-A 251800 ||| || ||| || | || || || | || || | || | ||| | | | Sbjct 35944542 GAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCGGACGCG-GCCCTCGTCGA 35944600 Query 251801 GCTTGTTCTCCAGCTTTGA--GTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 ||||| | | | || ||| ||||| | | || | ||| || |||||||| Sbjct 35944601 GCTTG--CCGCGGAGGAGATCGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTC 35944658 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||||| | || || ||||| | || || ||| ||||||| Sbjct 35944659 GCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGGCCGCGCTTCTTGAGCCA 35944718 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| ||||| ||||| || ||||| | | |||||||| || | | || || || Sbjct 35944719 GAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCGACGAG 35944778 Query 251979 GCGCTCAGCAAACGACTTGTCCTGCGACAA--GAACTTCTGTGCCCATGCTGCCTTCTTT 252036 |||||| || || | | || || | | | | || ||||| | ||||| Sbjct 35944779 GCGCTCGGCGAA-GCGCTCCCCGCCGTCGATCCAGCGCATG-GCCCAGTCGGCCTTGCGG 35944836 Query 252037 CCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCG 252096 | || ||||||| || ||||| || ||||| || | |||||| |||| | Sbjct 35944837 CGCACGGCGGGGACGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTCGGCGCCGTCGCGG 35944896 Query 252097 ATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGG 252156 ||| | || ||||| || |||||||||||||| |||||| ||| || |||||| Sbjct 35944897 ATGTAGGTCTCCAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGATGGCGATCTGG 35944956 Query 252157 TAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTT--CCGT-GGA---AAAGTTGTTT 252210 | | |||| || ||||| | || | ||| | ||| ||| ||| | Sbjct 35944957 AAGCCGTAGA--AGGCGCGC----GCCTCCGCGACCTGCACGTCGGACATGAAGCGGGAG 35945010 Query 252211 GCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATG 252270 || | |||||| | ||| ||||| ||| | | || |||||| | || | | |||| Sbjct 35945011 GCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGGGAGATG 35945070 Query 252271 AAGTGACGCTCATCGTCGTTGAGCTTGTCACG--CCAGTCGGCAATGTCCTGATTCAGAG 252328 ||||| ||||| ||| | |||| | | || ||||| | ||| | |||| Sbjct 35945071 AAGTGGCGCTCGTCGGGGGAGAGC--GCCGCGTCCCAGTGGCGCGCGTC--GGCCGAGAG 35945126 Query 252329 G--AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTA 252371 | || || || |||||||||| | | ||||||||||||||| Sbjct 35945127 GTCCACCTCCTCGGCCGTCCAGAAGGACGCCACCGCCTTCTTGTA 35945171 >seq6 Length=48101398 Score = 95.1 bits (104), Expect = 2e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||||||||||||||| || ||||||| || |||||||||||||||| Sbjct 39126637 TAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 39126696 Query 142562 GCCCCAC 142568 ||||||| Sbjct 39126697 GCCCCAC 39126703 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 38678385 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 38678444 Query 142563 CCCCAC 142568 |||||| Sbjct 38678445 CCCCAC 38678450 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 38711625 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 38711684 Query 142563 CCCCAC 142568 |||||| Sbjct 38711685 CCCCAC 38711690 >seq9 Length=72259479 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 16066226 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 16066285 Query 142563 CCCCAC 142568 |||||| Sbjct 16066286 CCCCAC 16066291 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 56523670 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 56523611 Query 142563 CCCCAC 142568 |||||| Sbjct 56523610 CCCCAC 56523605 >seq5 Length=59822759 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 9656840 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9656781 Query 142563 CCCCAC 142568 |||||| Sbjct 9656780 CCCCAC 9656775 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 10438582 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10438523 Query 142563 CCCCAC 142568 |||||| Sbjct 10438522 CCCCAC 10438517 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 907914 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 907973 Query 142564 CCCAC 142568 ||||| Sbjct 907974 CCCAC 907978 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 5830440 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5830381 Query 142564 CCCAC 142568 ||||| Sbjct 5830380 CCCAC 5830376 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 10438419 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10438360 Query 142563 CCCCAC 142568 |||||| Sbjct 10438359 CCCCAC 10438354 >seq3 Length=64463019 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 16398987 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 16399046 Query 142563 CCCCAC 142568 |||||| Sbjct 16399047 CCCCAC 16399052 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 60473472 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 60473531 Query 142563 CCCCAC 142568 |||||| Sbjct 60473532 CCCCAC 60473537 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 60719446 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 60719387 Query 142563 CCCCAC 142568 |||||| Sbjct 60719386 CCCCAC 60719381 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 13011229 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13011288 Query 142564 CCCAC 142568 ||||| Sbjct 13011289 CCCAC 13011293 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 13391300 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13391359 Query 142564 CCCAC 142568 ||||| Sbjct 13391360 CCCAC 13391364 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 42040683 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 42040742 Query 142564 CCCAC 142568 ||||| Sbjct 42040743 CCCAC 42040747 >seq2 Length=61504503 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 42005668 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 42005727 Query 142563 CCCCAC 142568 |||||| Sbjct 42005728 CCCCAC 42005733 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 42508068 AGCCCGTCTAGCTCAGTCGGTAGAGCGGAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 42508127 Query 142563 CCCCAC 142568 |||||| Sbjct 42508128 CCCCAC 42508133 >seq8 Length=47074253 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 46433521 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 46433580 Query 142564 CCCAC 142568 ||||| Sbjct 46433581 CCCAC 46433585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027728970926108