Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 seq211 86.0 4e-12 seq7 86.0 4e-12 >seq1 Length=61571842 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||||| || ||||| ||||| ||| |||| ||| | | Sbjct 52871857 ATGCAGATCTTTGTCAAGACATTGACTGGCAAGACCATCACCCTGGAGGTGGAGAGCTCC 52871798 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||| || || ||||| | ||| | | || Sbjct 52871797 GACACCATTGATAATGTCAAGGCCAAAATCCAGGACAAGGAGGGAATTCCTCCAGATCAG 52871738 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||| ||||| || || || || ||| | || |||| |||||||| Sbjct 52871737 CAGAGGCTCATCTTCGCTGGGAAGCAGCTGGAGGATGGACGTACCTTGGCAGATTACAAC 52871678 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| ||||||||| |||| | || | ||||| || Sbjct 52871677 ATCCAGAAGGAATCCACTCTTCATCTGGTCCTCCGCCTCCGAGGTGG 52871631 >seq211 Length=21435 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||||| || ||||| || || ||| |||| ||| | | Sbjct 1740 ATGCAGATCTTTGTCAAGACATTGACTGGCAAGACGATCACCCTGGAGGTGGAGAGCTCC 1799 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||| || || ||||| | ||| | | || Sbjct 1800 GACACCATTGATAATGTCAAGGCCAAAATCCAGGACAAGGAGGGAATTCCTCCAGATCAG 1859 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||| ||||| || || || || ||| | || |||| |||||||| Sbjct 1860 CAGAGGCTCATCTTCGCTGGGAAGCAGCTGGAGGATGGACGTACCTTGGCAGATTACAAC 1919 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| ||||||||| |||| | || | ||||| || Sbjct 1920 ATCCAGAAGGAATCCACTCTTCATCTGGTCCTCCGCCTCCGAGGTGG 1966 >seq7 Length=46770411 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||||| || ||||| || || ||| |||| ||| | | Sbjct 21030831 ATGCAGATCTTTGTCAAGACATTGACTGGCAAGACGATCACCCTGGAGGTGGAGAGCTCC 21030772 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||| || || ||||| | ||| | | || Sbjct 21030771 GACACCATTGATAATGTCAAGGCCAAAATCCAGGACAAGGAGGGAATTCCTCCAGATCAG 21030712 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||| ||||| || || || || ||| | || |||| |||||||| Sbjct 21030711 CAGAGGCTCATCTTCGCTGGGAAGCAGCTGGAGGATGGACGTACCTTGGCAGATTACAAC 21030652 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| ||||||||| |||| | || | ||||| || Sbjct 21030651 ATCCAGAAGGAATCCACTCTTCATCTGGTCCTCCGCCTCCGAGGTGG 21030605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358089062278552