Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq4 109 5e-19 seq211 98.7 8e-16 seq7 98.7 8e-16 seq1 95.1 1e-14 seq6 82.4 6e-11 >seq4 Length=49548238 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| || Sbjct 2205325 ATACCACCACGCAGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCA 2205266 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||| ||||| || || ||||| ||||||||||||| |||||||| Sbjct 2205265 GCAAGGGTACGTCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGG 2205206 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| ||||| || | | |||| |||||| | ||| || Sbjct 2205205 GGGATGCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCTGAGGACTCA 2205146 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| || ||||| || ||||| |||||||| Sbjct 2205145 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 2205096 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| || | || || ||| || || || || ||| Sbjct 2204836 GTGGACTCCTTCTGAATGTTGTAGTCAGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 2204777 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| |||||||||||||| ||||| ||||| || Sbjct 2204776 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTG 2204717 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | ||| || || || | ||| | || |||||||| || || Sbjct 2204716 ACGTTGTCAATTGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 2204657 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 2204656 TTAACAAATATCTGCAT 2204640 >seq211 Length=21435 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||||||||| || ||||| ||| || || || || ||| Sbjct 1936 GTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGTCCATCCTCCAGCTGCTTCCCA 1877 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| | ||| || || |||||||| || || ||||| || || || Sbjct 1876 GCGAAGATGAGCCTCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGGATTTTGGCCTTG 1817 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| | || || |||| ||| | ||| ||||| |||| || Sbjct 1816 ACATTATCAATGGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCTTGCCAGTCAATGTC 1757 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 1756 TTGACAAAGATCTGCAT 1740 >seq7 Length=46770411 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||||||||| || ||||| ||| || || || || ||| Sbjct 21030635 GTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGTCCATCCTCCAGCTGCTTCCCA 21030694 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| | ||| || || |||||||| || || ||||| || || || Sbjct 21030695 GCGAAGATGAGCCTCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGGATTTTGGCCTTG 21030754 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| | || || |||| ||| | ||| ||||| |||| || Sbjct 21030755 ACATTATCAATGGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCTTGCCAGTCAATGTC 21030814 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 21030815 TTGACAAAGATCTGCAT 21030831 >seq1 Length=61571842 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||||||||| || ||||| ||| || || || || ||| Sbjct 52871661 GTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGTCCATCCTCCAGCTGCTTCCCA 52871720 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| | ||| || || |||||||| || || ||||| || || || Sbjct 52871721 GCGAAGATGAGCCTCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGGATTTTGGCCTTG 52871780 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| | || || |||| ||| | || ||||| |||| || Sbjct 52871781 ACATTATCAATGGTGTCGGAGCTCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAATGTC 52871840 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 52871841 TTGACAAAGATCTGCAT 52871857 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || ||||||||||| | || || ||| || || || || || || || Sbjct 2756114 TCCTTCTGGATGTTGTAATCAGCAAGCGTGCGCCCATCCTCGAGCTGCTTGCCGGCAAAG 2756055 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 ||||| ||||| |||||||| |||||||| || ||||| ||||| || | | Sbjct 2756054 ATGAGCCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 2755995 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| |||||| | || || || || | ||| | || |||||||| || || || ||| Sbjct 2755994 TCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACA 2755935 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 2755934 AAGATCTGCAT 2755924 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || ||||||||||| || | || || ||| || | || || ||||| || Sbjct 3014542 TCCTTCTGAATGTTGTAGTCCGCAAGGGTGCGCCCATCCTCCAACTGCTTGCCAGCAAAG 3014601 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || |||||||| |||||||| || ||||| || ||||| ||||| || | | Sbjct 3014602 ATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 3014661 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||||| ||| || || || | ||| | || ||||| || || || || || Sbjct 3014662 TCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTAACG 3014721 Query 114372 AAAATCTGCAT 114382 ||||||||||| Sbjct 3014722 AAAATCTGCAT 3014732 >seq6 Length=48101398 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || || ||| ||||||| ||||| |||||||| || ||||| || ||| Sbjct 37311203 TCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 37311144 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | |||| |||||| | || || || || | ||| | Sbjct 37311143 TCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCCACCTCGAGGGTGATG 37311084 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || ||||||||||| || || || || |||||||| Sbjct 37311083 GTCTTGCCGGTCAGGGTCTTAACGAAGATCTGCAT 37311049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420092474263056