Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 394 2e-104 seq7 367 2e-96 >seq4 Length=49548238 Score = 394 bits (436), Expect = 2e-104 Identities = 602/844 (71%), Gaps = 23/844 (3%) Strand=Plus/Minus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 |||||||||||| | ||| |||||| ||||||||| | ||||| || ||| || Sbjct 42842800 TACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTGGACCTCTCCGCCGACGCG 42842741 Query 42372 GCCGGC--TGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGG 42426 |||| ||||| | | ||||| |||| ||| || || | || | Sbjct 42842740 --CGGCACTGGGACGAGGCGCTGTCCCCCGACGAGCGCCACTTCGTCTCCCACGTGCTCG 42842683 Query 42427 CCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAG 42486 |||||||||||||||| |||||||| || |||||||| || | | |||||| | Sbjct 42842682 CCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCTTCGCGCTTCATGTCCG 42842623 Query 42487 AGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGC 42546 | |||||| | |||||||| |||||||||||||||||| ||||| |||||| | | Sbjct 42842622 ACGTGCAGGTCGCCGAGGCGCGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCC 42842563 Query 42547 ACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACG 42606 |||| ||| ||||| | |||||| | || ||||||| || || |||| || Sbjct 42842562 ACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCGAGAAGGACC 42842503 Query 42607 GGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCA 42666 | || ||| ||||| || || ||||| | || ||||| |||||||| | Sbjct 42842502 GCCTCTTCCGCGCCATCGACACCGTGCCCGCCGTCCGCCGCAAGGCCGACTGGGCCATGC 42842443 Query 42667 ACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 ||||||||| | ||| ||| |||| |||| | || || ||||| || ||| Sbjct 42842442 GCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTT 42842387 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTC 42784 ||||||||||||||||||||| ||||| | ||||||||||||||||| || || || Sbjct 42842386 GAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTC 42842327 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844 ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| | || Sbjct 42842326 -ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGA 42842268 Query 42845 CTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGTC 42902 ||| ||||||||||| | ||| || |||| | |||| ||||| ||| || ||| Sbjct 42842267 CTTCGCCTGCCTCCTCT--ACGA-CCTCCTCCGCAGCAAG--CTCGACGAGGCCCGCGTC 42842213 Query 42903 CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC 42962 || | ||| || | || ||||| || |||||| |||||| || | |||| ||| Sbjct 42842212 CGCGAGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGTCTGCGACGCGCTCCCC 42842153 Query 42963 GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGAC 43022 || | || |||||||||||| || ||||||| || |||||||| ||| |||||||||| Sbjct 42842152 GTCGCGCTCGTCGGCATGAACGGCGCCCTCATGAGCCAGTACATCGAGTTCGTCGCCGAC 42842093 Query 43023 CATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTT 43081 | || || || | | | || ||| | |||||| | | ||||||||||| Sbjct 42842092 CGCCTGCTCATGGC-GCTCGGGTGCAGGAAGATGTACAACGCCGCCAACCCCTTCGACTG 42842034 Query 43082 TATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTA 43141 |||||| ||||||| || |||||||||||||||| |||||||||||||||| |||||| Sbjct 42842033 GATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 42841974 Query 43142 CCAG 43145 |||| Sbjct 42841973 CCAG 42841970 >seq7 Length=46770411 Score = 367 bits (406), Expect = 2e-96 Identities = 527/729 (72%), Gaps = 18/729 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| || |||||||| ||| || | |||||| Sbjct 35945057 CTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCCGCTTCATG 35944998 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | ||||||||| |||||||||||||||||| ||||| |||||| Sbjct 35944997 TCCGACGTGCAGGTCGCGGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAAC 35944938 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | ||||| | || ||||||| || || |||| Sbjct 35944937 ATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGGCGCCGAGAAG 35944878 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | || ||| ||||| || || | ||| | | ||||| |||||||| Sbjct 35944877 GACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCC 35944818 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | ||||||||| | || ||| |||| |||| | || || ||||| || Sbjct 35944817 ATGCGCTGGATCGACGGCGGGGAGCGC----TTCGCCGAGCGCCTCGTCGCCTTCGCCTG 35944762 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GG 42780 ||||||||||||||||||||||||| ||||| | ||||||||||||||||| || || Sbjct 35944761 CGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGG 35944702 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 || ||||| || ||||||||||| ||||| |||||| | | |||||||| || || Sbjct 35944701 CCTC-ATGCCGGGTCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACT 35944643 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | ||||| ||||||||||| | ||| | |||| | |||| ||||| ||| || Sbjct 35944642 GCGACTTCGCCTGCCTCCTCT--ACGA-TCTCCTCCGCGGCAAG--CTCGACGAGGGCCG 35944588 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 ||||| | ||| || | || ||||| || |||||| |||||| || | |||| Sbjct 35944587 CGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGTCTGCGACGCGCT 35944528 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 ||||| | || ||||| |||||| || ||||||| || |||||||| ||| |||||| Sbjct 35944527 CCCCGTCGCGCTCGTCGGAATGAACGGCGGCCTCATGAGCCAGTACATCGAGTTCGTCGC 35944468 Query 43019 CGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAAC-ACGCCGTGCCCCTTC 43076 ||||| || || || | | |||| | || | || ||| |||| ||||||| Sbjct 35944467 CGACCGCCTGCTCATGGC-GCTGGGCCACAAGAAGATGTATAACGTCGCC-AACCCCTTC 35944410 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| |||||| ||||||| || |||||||||||||||| |||||||||||||||| Sbjct 35944409 GACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGG 35944350 Query 43137 GACTACCAG 43145 || |||||| Sbjct 35944349 GAGTACCAG 35944341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944242546882880