Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4 150 4e-31 seq7 129 1e-24 >seq4 Length=49548238 Score = 150 bits (166), Expect = 4e-31 Identities = 305/450 (68%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||||| | |||||||| || || | || || || ||| Sbjct 42842419 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTTGAGGGCATCTTCTTCTCGGGCTCCTTC 42842360 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 42842359 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 42842300 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| ||| | |||| || | || ||| Sbjct 42842299 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 42842240 Query 243469 CAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGA 243527 | | |||||| | | | || ||| | ||| || | || || || || | ||| Sbjct 42842239 CGCAGCAAGCT-CGACGAGGCCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGA 42842181 Query 243528 AAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCAT 243587 || ||| | |||||||| | || | ||| | ||||||||| | ||||| Sbjct 42842180 GCGCGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGCCCTCAT 42842121 Query 243588 GGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGT 243647 | | ||||||||||| ||||| ||||||||| | |||| ||||| || | ||| | Sbjct 42842120 GAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTCGGGTGCAGGAAGAT 42842061 Query 243648 GTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAA 243707 ||||||| || |||||||| | || ||||||||||| ||||| || || || || || Sbjct 42842060 GTACAACGCCGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAA 42842001 Query 243708 CTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||| ||||| ||| | || || || Sbjct 42842000 CTTCTTCGAGAAGCGCGTCGGCGACTACCA 42841971 >seq7 Length=46770411 Score = 129 bits (142), Expect = 1e-24 Identities = 300/450 (67%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||||| | ||||| || || || | || || || ||| Sbjct 35944790 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 35944731 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| || ||| | || |||||| Sbjct 35944730 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAACGAG 35944671 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| ||| | |||| || | || ||| Sbjct 35944670 CTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACGATCTCCTC 35944611 Query 243469 CAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGA 243527 | |||||| | | | || ||| | ||| || | || || || || | ||| Sbjct 35944610 CGCGGCAAGCT-CGACGAGGGCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGA 35944552 Query 243528 AAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCAT 243587 || ||| | |||||||| | || | ||| | || |||||| | ||||| Sbjct 35944551 GCGCGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGAATGAACGGCGGCCTCAT 35944492 Query 243588 GGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGT 243647 | | ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| | Sbjct 35944491 GAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCCACAAGAAGAT 35944432 Query 243648 GTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAA 243707 ||| ||| | |||||||| | || ||||||||||| ||||| || || || || || Sbjct 35944431 GTATAACGTCGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAA 35944372 Query 243708 CTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||| ||||| ||| | || || || Sbjct 35944371 CTTCTTCGAGAAGCGCGTCGGGGAGTACCA 35944342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102764298237800