Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4 141 1e-28 seq7 132 6e-26 >seq4 Length=49548238 Score = 141 bits (156), Expect = 1e-28 Identities = 309/453 (68%), Gaps = 10/453 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 42841973 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 42842032 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGTTTGAGGAGAC 125876 | || || ||||| | ||| | || | |||||| | | |||| || | Sbjct 42842033 CCAGTCGAAGGGGTTGGCGGCGTTGTACATCTTCCTGCACCCGAG-CGCCATGAGCAGGC 42842091 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTTA 125935 | || | |||| |||| ||||||| ||| | |||||| |||| ||| | | Sbjct 42842092 GGTCGGCGACGAACTCGATGTACTGGCTCATGAGGGCGCCGTTCATGCCGACGAGCGCGA 42842151 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 | ||||||||||| ||| |||| | ||| || || ||||| || ||||| || Sbjct 42842152 CG-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCG 42842210 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAAC 126052 | | | | || | | | | |||| | | ||| | || ||| || ||| || Sbjct 42842211 CGGACGCGGGCCTCGTCGAGCTTGCTGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAAG 42842267 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || ||| || |||||||| ||||||||||| || || |||||| || || |||||| Sbjct 42842268 TCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 42842327 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 || || |||||||| | |||||| || || || || || |||||||||||||| ||||| Sbjct 42842328 AGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCA 42842387 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || ||||| || | ||| ||||| || ||| Sbjct 42842388 ACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 42842420 Score = 100 bits (110), Expect = 3e-16 Identities = 251/380 (66%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 ||||||| || ||||||||| | ||||| || || || || ||| || | ||| Sbjct 528541 ACGGTGACCTGACGATCAAACCTTCCTGGACGCAGAAGAGCAGAGTCCAGCACATCGGGT 528482 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 | ||| || || || | |||| || || | | | |||||||||||||||| ||| Sbjct 528481 CTGTTGGTGGCGGCAAGCACAATGACACCACTGTTGCCGGCAAAGCCATCCATCTCCGTC 528422 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA---CCCGCACTG 10951 ||||| || || ||||| || || | || || || | |||| || |||| Sbjct 528421 AAGAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTACC---ACCACCAAGGCCGGCACCA 528365 Query 10952 CGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGG 11011 || ||| | ||||| || ||||| ||||||||||| || || || || || | | Sbjct 528364 CGCTGCCTCCCGACAGCATCAATCTCATCGATGAAGACAATGCAGGGCGCCTTGGCCTTG 528305 Query 11012 GCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAA 11071 || || || | || || || || |||||||||||| || || | || || || Sbjct 528304 GCCTTCTCGAAAAGGTCGCGCACCCTGGAGGCACCGACACCGACGAAGAGCTCGACGAAC 528245 Query 11072 TTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGG 11131 | | || | || || |||||| || || ||||| |||| ||| || ||||| Sbjct 528244 TCTGACGCCGCGCAGGAGAAGAAGGGTACCCCGGCCTCACCAGCGACGGCACGCGCGAGC 528185 Query 11132 AGGGTCTTCCCCGTCCCAGG 11151 ||||| || || ||||| || Sbjct 528184 AGGGTTTTACCTGTCCCGGG 528165 Score = 95.1 bits (104), Expect = 1e-14 Identities = 354/547 (65%), Gaps = 10/547 (2%) Strand=Plus/Plus Query 10610 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 10669 ||| | ||| ||||||| ||| || | |||||| || | |||||| || ||| || Sbjct 41769281 CGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCTGAACCCG 41769340 Query 10670 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCTGGCG 10729 | ||| || | || | || ||| ||| ||| ||| |||||||| ||| | Sbjct 41769341 GGCGTGCGCATGGCCACCACGCTGAGCGACACGTCGGGGTCCAGCTTCTTGT---TGGAG 41769397 Query 10730 -TGGACACCCAAA--ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTA 10786 || ||||| | |||| ||| || |||||||| || || ||| ||| || Sbjct 41769398 CTGTGCACCCTGAGGATCTCCTCCCGGCCGCGCACGTCAGGGAGCCCGACGCTGACCTGC 41769457 Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || || ||||| || |||||||| || |||||||| ||||| || ||||| || || Sbjct 41769458 CGGTCGAAGCGGCCCGGGCGGAGCAGCGCGTCGTCGAGGATCTCCGGCCGGTTGGTGGCA 41769517 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 |||| || | || ||| | ||| || || |||||||| |||| || || || Sbjct 41769518 CCGATCACGATGACGCCGCTGTCGCCGCTGAACCCGTCCATCTCCGTCAGCAGCTGGTTC 41769577 Query 10907 ATGGTTTGTTCGCGTTCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTACCGAC 10965 | || || || | || || || | | || | |||| | ||| || ||||| Sbjct 41769578 AGCGTCTGCTCCCTCTCGTCGTTTCCCCCGCCAATG-CCCGTCCCGCGCTGGCGGCCGAC 41769636 Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGAT 11025 |||||| || || |||||||| |||| ||||| || | ||| | |||| Sbjct 41769637 GGCGTCGATCTCGTCGATGAAGACGAGGCACGGCGCGTTGGCCTTGGCCTTGTTGAAGAG 41769696 Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACA 11085 || || || | | || || || || || ||||| || | || | || | | | ||| Sbjct 41769697 GTCCCGCACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACTCGGAGCCCG-ACA 41769755 Query 11086 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144 | || ||| || ||| || || || |||||||| || || || |||||||||| Sbjct 41769756 GCGAGAAGAATGGCACGCCGGCCTCCCCAGCGATGGCCTTCGCCAGCAGCGTCTTCCCCG 41769815 Query 11145 TCCCAGG 11151 |||| || Sbjct 41769816 TCCCCGG 41769822 Score = 91.5 bits (100), Expect = 2e-13 Identities = 191/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 |||||||| || || | || | ||| || | ||| ||| ||||| || || || Sbjct 3676912 TCAAAGCGTCCAGGCCTAAGTAAAGCGGAATCCAAGATGTCAGCTCGGTTAGTGGCAGCA 3676853 Query 10850 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 10909 || |||| || || || | ||||| |||||||| |||||||| ||||| |||| Sbjct 3676852 ATAACAATAATTCCAGTGTTTCCCTCAAAACCATCCATTTCAGTCAACAGTTGGTTGAGA 3676793 Query 10910 GTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTACCGACGGCG 10969 || || || | ||||||||| | | ||| | || | |||| |||| || || Sbjct 3676792 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTACCAACAGCA 3676733 Query 10970 TCAATTTCATCGATGAAAACGATACACGGTTGATT-TTCACGGGCAACTTCAAAGATATC 11028 ||||||||||| | || || || || || ||| | | || | ||| ||| | ||| Sbjct 3676732 TCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATC 3676674 Query 11029 TCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 || |||| ||||| ||||| |||||||| |||||||| Sbjct 3676673 ACGAACTCGGGAAGCACCAACACCAACAAACATCTCCACAAA 3676632 >seq7 Length=46770411 Score = 132 bits (146), Expect = 6e-26 Identities = 118/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||| ||||||||||| || || |||||| || || |||||||| || Sbjct 35944644 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGGCC 35944703 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || || || || || |||||||||||||| ||||| || || Sbjct 35944704 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 35944763 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||||| || | ||| ||||| || ||| Sbjct 35944764 GGCGAAGGCGACGAGGCGCTCGGCGAAG 35944791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597292460859040