Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 1e-13 seq5 87.8 2e-12 seq4347 82.4 7e-11 seq4 82.4 7e-11 seq1 82.4 7e-11 >seq2 Length=61504503 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| || |||||||| |||||||| ||||| || || ||| | Sbjct 52668218 CCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCG 52668277 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | || | || |||||||||||||| Sbjct 52668278 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 52668337 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| ||||| || || || || |||| || | || | ||||||| ||| || Sbjct 52668338 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCAC 52668396 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || | ||| || || || || || || || || || |||||| Sbjct 52668397 CTCGAGGGTGATCGTCTTCCCCGTCAGCGTCTTCACGAAGATCTGCATC 52668445 >seq5 Length=59822759 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||||||||| | | ||| || |||||||| || ||||| ||||| || || ||| Sbjct 47572618 TCCTCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 47572677 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || ||| || || | || || || ||| | || | || |||||||||||||| Sbjct 47572678 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 47572737 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 ||||| || || || || || || || | || | || | |||||| || ||||| | Sbjct 47572738 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCA 47572796 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || | || || || || || || || || || || |||||| Sbjct 47572797 CCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATC 47572846 >seq4347 Length=1781 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || || ||||| ||||| || || || | ||| ||| || Sbjct 1221 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTC 1162 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || ||||| | |||| || ||||||||||| || ||||| || || || || Sbjct 1161 CAGCTGCTTGCCTGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 1102 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || |||| || | || | ||||||||| ||||| || ||||| || | || | Sbjct 1101 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCT 1043 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||| || | || || ||||| || |||||| Sbjct 1042 TGCCAGTCAAGGTCTTCACAAAGATCTGCATC 1011 >seq4 Length=49548238 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| || ||||| | | ||| || || || || || ||||| ||||| || || || Sbjct 2544535 TCCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 2544594 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| | ||| || | || || || || | |||| || ||||||||||| || Sbjct 2544595 CAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGG 2544654 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 ||||| || || || || || || || | || | || | |||||| |||||||| | Sbjct 2544655 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCAGAAGACTCCA 2544713 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || | || |||||||| || || || ||||| || ||||| Sbjct 2544714 CCTCCAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 2544762 >seq1 Length=61571842 Score = 82.4 bits (90), Expect = 7e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 45219 TGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGT 45277 ||||||||||| |||||||| || || || || || || |||| || | || | ||| Sbjct 3009984 TGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGT 3010042 Query 45278 GTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTG 45337 |||||| ||||| || ||||| || | || |||||||| || || || ||||| || || Sbjct 3010043 GTCGGAGGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTG 3010102 Query 45338 CATC 45341 |||| Sbjct 3010103 CATC 3010106 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| | ||| || || || ||||| |||||||| || || Sbjct 3014278 CCACCACGGAGGCGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGCA 3014337 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| || || || || | |||| || ||||||||||| || Sbjct 3014338 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGG 3014397 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || |||| || | || | ||||||||| ||||| || Sbjct 3014398 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCCAC 3014456 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || | || ||||| || | || || || || || |||||| Sbjct 3014457 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATCTGCATC 3014505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451956937472480