Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq2 262 5e-65 seq4 183 4e-41 seq8 100 4e-16 >seq2 Length=61504503 Score = 262 bits (290), Expect = 5e-65 Identities = 343/472 (73%), Gaps = 7/472 (1%) Strand=Plus/Plus Query 8055 TAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAG-----ACGAGGAATACAGCAGATGC 8109 |||| ||||| ||| |||||||| | || |||| | | ||| ||||||| || Sbjct 2077873 TAGCATCAGAAAAACTTCCTTGACCAATAGAATAGGGTCAATCAAGAAAACAGCAGTAGC 2077932 Query 8110 TGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGA 8169 || ||||| ||||| || ||||| ||| ||||| ||||||||||| |||||| || Sbjct 2077933 AGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACT 2077992 Query 8170 AAGTTCCCACTCACGACCCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAG 8229 ||||||||||||||||||||| || | | ||| | | |||||| | | || || Sbjct 2077993 AAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAG 2078052 Query 8230 TTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATA 8289 | |||| || || ||||| | ||||||||||| ||| || |||||||| || || || Sbjct 2078053 CTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTA 2078112 Query 8290 GAAGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCC 8349 ||||| | || || || ||||| ||||| || ||||||||||| || ||||| || Sbjct 2078113 AAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCC 2078172 Query 8350 ATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGC 8409 ||| | | ||||||| || || ||||| || || ||||| || || ||||| ||||| Sbjct 2078173 ATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGC 2078232 Query 8410 GACGAAAGCGACGATGAA-ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACAC 8468 || |||||||| || || ||| | || || | | | ||||| ||||||| |||| Sbjct 2078233 GATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACAC 2078291 Query 8469 CGAACCAACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 ||||||| |||| || ||||| || | |||| |||| |||||| ||||| Sbjct 2078292 CGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 2078343 >seq4 Length=49548238 Score = 183 bits (202), Expect = 4e-41 Identities = 232/318 (73%), Gaps = 1/318 (0%) Strand=Plus/Minus Query 8050 AGGC-ATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATG 8108 |||| ||||| ||||| ||| |||||||| | ||| | | | ||| ||||||| | Sbjct 24272840 AGGCTATAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAG 24272781 Query 8109 CTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAG 8168 | || ||||| ||||| || ||||| ||| ||||| ||||||||||| |||||| || Sbjct 24272780 CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAAC 24272721 Query 8169 AAAGTTCCCACTCACGACCCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGA 8228 ||||||||||||| ||||||| || | | ||| | | |||||| | | || | Sbjct 24272720 TAAGTTCCCACTCATGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTA 24272661 Query 8229 GTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGAT 8288 | | |||| || || ||||| | ||||||||||| ||| || |||||||| || || | Sbjct 24272660 GCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGT 24272601 Query 8289 AGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGC 8348 | ||||| | || || || ||||| ||||| || ||||||||||| || ||||| | Sbjct 24272600 AAAAGTGCAATCCGATCGCTGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTC 24272541 Query 8349 CATACATGAGCGAACCAG 8366 |||| | | ||||||| Sbjct 24272540 CATAAAGTAAAGAACCAG 24272523 >seq8 Length=47074253 Score = 100 bits (110), Expect = 4e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 8320 AACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACG 8379 || || ||||||||||| || || || ||||| | | |||||| || || ||||| Sbjct 5860515 AATAATAGCACCAGAGACAATATTATTTCCATAAAGTAAAGAACCAAAAACAGGCTCACG 5860574 Query 8380 GATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATAGCAG 8438 || || ||||| || || ||||||||||||| ||| |||| || || || | || | Sbjct 5860575 AATACCATCAATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAATACGGA-AGTTG 5860633 Query 8439 CAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTGTTGG 8498 | | | | ||||| ||||||| ||||| ||||| |||| || ||||| || | || Sbjct 5860634 CGGTCAATAAGGTAGGGATCATCAAAACACCTAACCATCCGATGTAAAGACGGTTTTCGG 5860693 Query 8499 TGGAGGTTACCCAGTTACAGAA 8520 || ||| |||||||||||| Sbjct 5860694 TGCTACTTATCCAGTTACAGAA 5860715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622061125526720