Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq7 136 5e-27 seq4 136 5e-27 >seq7 Length=46770411 Score = 136 bits (150), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| ||||||||||| || || |||||| ||||| |||||||| || Sbjct 35944644 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGGCC 35944703 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || || || || ||||| ||||||||||| ||||| || || Sbjct 35944704 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 35944763 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||||| || | || |||||||| ||| Sbjct 35944764 GGCGAAGGCGACGAGGCGCTCGGCGAAG 35944791 >seq4 Length=49548238 Score = 136 bits (150), Expect = 5e-27 Identities = 308/453 (68%), Gaps = 10/453 (2%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 42841973 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 42842032 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGTTTGAGGAGAC 127349 | || || ||||| | ||| | || | |||||| | | |||| || | Sbjct 42842033 CCAGTCGAAGGGGTTGGCGGCGTTGTACATCTTCCTGCACCCGAG-CGCCATGAGCAGGC 42842091 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTTA 127408 | || | |||| |||| ||||||| ||| | |||||| |||| ||| | | Sbjct 42842092 GGTCGGCGACGAACTCGATGTACTGGCTCATGAGGGCGCCGTTCATGCCGACGAGCGCGA 42842151 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 | ||||||||||| ||| |||| | ||| ||||| || || || ||||| || Sbjct 42842152 CG-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCG 42842210 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGCAAAC 127525 | | | || | | | | |||| | | ||| | || ||| || || || Sbjct 42842211 CGGACGCGGGCCTCGTCGAGCTTGCTGCGGAGGAGGTCGTAGAGGAGG--CAG-GCGAAG 42842267 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || ||| || |||||||| ||||||||||| || || |||||| || || |||||| Sbjct 42842268 TCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 42842327 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 || || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 42842328 AGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCA 42842387 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || ||||| || | || |||||||| ||| Sbjct 42842388 ACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 42842420 Score = 113 bits (124), Expect = 6e-20 Identities = 361/552 (65%), Gaps = 6/552 (1%) Strand=Plus/Plus Query 12518 GCCGTCGCGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGA 12577 |||| |||| | ||| ||||||| ||| || | |||||| || | |||||| || Sbjct 41769274 GCCGCGGCGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCT 41769333 Query 12578 GAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTC 12637 ||| || | ||| || | || | || ||| ||| ||| ||| |||||||| Sbjct 41769334 GAACCCGGGCGTGCGCATGGCCACCACGCTGAGCGACACGTCGGGGTCCAGCTTCTTGT- 41769392 Query 12638 TCGGGC-GTGGACACCCAAAATCTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGA 12696 | | || ||| || | | |||| ||| || |||||||| || || ||| ||| Sbjct 41769393 TGGAGCTGTGCACCCTGAGGATCTCCTCCCGGCCGCGCACGTCAGGGAGCCCGACGCTGA 41769452 Query 12697 TCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCG 12756 || || || ||||| || |||||||| || |||||||| ||||| || ||||| | Sbjct 41769453 CCTGCCGGTCGAAGCGGCCCGGGCGGAGCAGCGCGTCGTCGAGGATCTCCGGCCGGTTGG 41769512 Query 12757 TCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTT 12816 | || |||| || | || ||| | ||| ||| || |||||||| |||| || | Sbjct 41769513 TGGCACCGATCACGATGACGCCGCTGTCGCCGCTGAACCCGTCCATCTCCGTCAGCAGCT 41769572 Query 12817 GATTGATGGTTTGTTCACGTTCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTA 12875 | || | || || || | || || || | | || | |||| | ||| || Sbjct 41769573 GGTTCAGCGTCTGCTCCCTCTCGTCGTTTCCCCCGCCAATG-CCCGTCCCGCGCTGGCGG 41769631 Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935 ||||||||||| || ||||| ||||| |||| ||||| || | ||| | Sbjct 41769632 CCGACGGCGTCGATCTCGTCGATGAAGACGAGGCACGGCGCGTTGGCCTTGGCCTTGTTG 41769691 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 |||| || ||||| | | || || || || || |||||||| | || | || | | Sbjct 41769692 AAGAGGTCCCGCACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACTCGGAGCCC 41769751 Query 12996 GAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 | ||| | || ||| || ||| || || || |||||||| || || || ||||| Sbjct 41769752 G-ACAGCGAGAAGAATGGCACGCCGGCCTCCCCAGCGATGGCCTTCGCCAGCAGCGTCTT 41769810 Query 13055 CCCCGTCCCTGG 13066 ||||||||| || Sbjct 41769811 CCCCGTCCCCGG 41769822 Score = 96.9 bits (106), Expect = 4e-15 Identities = 250/380 (66%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||||| || ||||||||| | ||||| || || || || ||| || | ||| Sbjct 528541 ACGGTGACCTGACGATCAAACCTTCCTGGACGCAGAAGAGCAGAGTCCAGCACATCGGGT 528482 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTC 12809 | ||| || || || | |||| || || | | | | |||||||||||||| ||| Sbjct 528481 CTGTTGGTGGCGGCAAGCACAATGACACCACTGTTGCCGGCAAAGCCATCCATCTCCGTC 528422 Query 12810 AAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA---CCCGCACTG 12866 ||||| || || ||||| || || | || || || | |||| || |||| Sbjct 528421 AAGAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTACCACC---ACCAAGGCCGGCACCA 528365 Query 12867 CGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGG 12926 || ||| | ||||| || ||||| || || ||||| || || || || || | | Sbjct 528364 CGCTGCCTCCCGACAGCATCAATCTCATCGATGAAGACAATGCAGGGCGCCTTGGCCTTG 528305 Query 12927 GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAA 12986 || || || | || ||||| || |||||||||||| || || | ||| || || Sbjct 528304 GCCTTCTCGAAAAGGTCGCGCACCCTGGAGGCACCGACACCGACGAAGAGCTCGACGAAC 528245 Query 12987 TTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGG 13046 | | || | || || |||||| || || ||||| |||| ||| || ||||| Sbjct 528244 TCTGACGCCGCGCAGGAGAAGAAGGGTACCCCGGCCTCACCAGCGACGGCACGCGCGAGC 528185 Query 13047 AGGGTCTTCCCCGTCCCTGG 13066 ||||| || || ||||| || Sbjct 528184 AGGGTTTTACCTGTCCCGGG 528165 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 117135 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG 117194 ||| ||||||||||| ||||| ||||| ||||| |||| || || | ||| | || Sbjct 46296018 TTGGGGCCTTGGTGTGCCAGCATTGAAAAGGGTCGGTGAGGCATGTGTAAACCAGCGCTG 46296077 Query 117195 GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGA 117254 ||||| || ||| |||| | | |||| |||||||||| ||| || || | ||| Sbjct 46296078 AGACATGAGATGGTATGTCTTTATGGCAGACTCAATGTCTTCCTTGTGTATTCCCACTGA 46296137 Query 117255 GACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA 117314 |||| ||| | ||||| ||| || |||| | | | || | ||| || |||||| Sbjct 46296138 AACCCTCATTAGCATGTGTTGTGGCCTTTCAACAACCTTCCCCGCAAGCTTCAAGAGGTA 46296197 Query 117315 ACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCCT 117362 | | |||| | ||||||| ||||| ||| || | || ||||||| Sbjct 46296198 AGACCTCTCAAGAGTCTTGAAGCCAAAGTAGTCATAATCGAAGTCCCT 46296245 Score = 91.5 bits (100), Expect = 2e-13 Identities = 191/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 |||||||| || || | || | ||| || | ||| ||| ||||| || || || Sbjct 3676912 TCAAAGCGTCCAGGCCTAAGTAAAGCGGAATCCAAGATGTCAGCTCGGTTAGTGGCAGCA 3676853 Query 12765 ATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 12824 || |||| || || || | || || |||||||| |||||||| ||||| |||| Sbjct 3676852 ATAACAATAATTCCAGTGTTTCCCTCAAAACCATCCATTTCAGTCAACAGTTGGTTGAGA 3676793 Query 12825 GTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTACCGACGGCG 12884 || || || | ||||||||| | | ||| | || | |||| |||| || || Sbjct 3676792 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTACCAACAGCA 3676733 Query 12885 TCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAA-CTTCAAAGATATC 12943 |||||||| |||| || || || || || ||| || ||| ||| ||| | ||| Sbjct 3676732 TCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATC 3676674 Query 12944 TCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 || |||| ||||| ||||| ||||||||||||||||| Sbjct 3676673 ACGAACTCGGGAAGCACCAACACCAACAAACATCTCCACAAA 3676632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613444407538080