Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 170 3e-37 seq7 161 2e-34 >seq4 Length=49548238 Score = 170 bits (188), Expect = 3e-37 Identities = 486/739 (66%), Gaps = 20/739 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 42841988 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAAGGGGTT 42842047 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| || |||| | ||||| ||| |||| | ||| || || || || Sbjct 42842048 GGCGGCGTTGTACATCTTCCTGCACCCGAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 42842107 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | | | ||| || || | ||| ||||||||||| || | Sbjct 42842108 GATGTACTGGCTCATGAGGGCGCCGTTCATGCCGACGAGCGCGACGGGGAGCGCGTCGCA 42842167 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGTTCGTACC 159887 | ||||| ||| || ||||| || |||| || |||| ||| ||| || | | Sbjct 42842168 GACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACGCGGGCCTCGT 42842226 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | |||||| | | |||| | | |||||||| || |||||||||||||| |||| Sbjct 42842227 CGAGCTTGCTGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGCAGGCCCT 42842283 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||||| ||||||||| | | ||||||||||||||| || ||| |||| Sbjct 42842284 CGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCGCGCTTCTTGA 42842343 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| |||| ||| | | | | || ||||| ||||| ||| || || || Sbjct 42842344 GCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCAACGCAGGCGAAGGCG 42842402 Query 160067 ACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 ||||| | ||| | || ||| | | | | | | |||| | ||||||| || || Sbjct 42842403 ACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCAGCGCATGGCCCAGTCGGC 42842458 Query 160126 CTTCTTTGCGATGCACGGCATGCGC----TCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 | ||||| | ||||| || | |||| |||| || | | ||||| ||| Sbjct 42842459 C----TTGCGGCGGACGGCGGGCACGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTCGG 42842514 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 | || ||| || | | |||| ||||||||| || | ||| | || |||| Sbjct 42842515 CGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGA 42842574 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACC 160301 |||| ||||| ||| |||||| |||||| |||||| || |||| | Sbjct 42842575 TGGCGATCTGGAAGCCGTAGAAGGCCCGCGCCTCGGCGACCTGCACGTCGGACATGAAGC 42842634 Query 160302 TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 | | || || | || | ||||||| ||| || ||||| || | |||||| | Sbjct 42842635 GCGAAGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGGG 42842694 Query 160362 AGATGAAATGTCTCTCGTC 160380 ||| ||| || | |||||| Sbjct 42842695 AGACGAAGTGGCGCTCGTC 42842713 >seq7 Length=46770411 Score = 161 bits (178), Expect = 2e-34 Identities = 484/739 (65%), Gaps = 20/739 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 35944359 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAAGGGGTT 35944418 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| ||| |||| || || ||| |||| | ||| || || || || Sbjct 35944419 GGCGACGTTATACATCTTCTTGTGGCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 35944478 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | | | ||| || || | ||| ||||||||||| || | Sbjct 35944479 GATGTACTGGCTCATGAGGCCGCCGTTCATTCCGACGAGCGCGACGGGGAGCGCGTCGCA 35944538 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGTTCGTACC 159887 | ||||| ||| || ||||| || |||| || |||| ||| ||| || | | Sbjct 35944539 GACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACGCGGCCCTCGT 35944597 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||||| | | | || | | |||||||| || ||||||||||| || |||| Sbjct 35944598 CGAGCTTGCCGCGGAGGAGATCGT---AGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCT 35944654 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||||| ||||||||| | | |||| |||||||||| || ||| |||| Sbjct 35944655 CGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGGCCGCGCTTCTTGA 35944714 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| |||| ||| | | | | || ||||| ||||| ||| || || || Sbjct 35944715 GCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCG 35944773 Query 160067 ACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 ||||| | ||| | || ||| | | | | | |||| | ||||||| || || Sbjct 35944774 ACGAGGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCAGCGCATGGCCCAGTCGGC 35944829 Query 160126 CTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 | ||||| ||||||| | | |||| |||| || | | ||||| ||| Sbjct 35944830 C----TTGCGGCGCACGGCGGGGACGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTCGG 35944885 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 | || ||| || | | |||| ||||||||| || | ||| | || |||| Sbjct 35944886 CGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGA 35944945 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACC 160301 |||| ||||| ||| |||||| ||||||| |||||| || |||| | Sbjct 35944946 TGGCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCCGCGACCTGCACGTCGGACATGAAGC 35945005 Query 160302 TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 | || || | || | ||||||| ||| || ||||| || | |||||| | Sbjct 35945006 GGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGGG 35945065 Query 160362 AGATGAAATGTCTCTCGTC 160380 ||||||| || | |||||| Sbjct 35945066 AGATGAAGTGGCGCTCGTC 35945084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795073815865280