Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq9 134 5e-26 seq211 87.8 7e-12 seq7 87.8 7e-12 seq2 87.8 7e-12 seq1 87.8 7e-12 >seq9 Length=72259479 Score = 134 bits (148), Expect = 5e-26 Identities = 250/367 (68%), Gaps = 9/367 (2%) Strand=Plus/Minus Query 451245 CTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTG 451304 ||||||||||||| ||||||||||||| || ||| || | | ||| || ||| Sbjct 1714363 CTGAAGAAATTTCTTCTATGGTTCTTATCAAGATGCGCGAGATCGTTGAAGCTTACCTTG 1714304 Query 451305 GTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGC 451364 | || | || | |||| || | |||||||| ||||| ||||||||| | || ||| Sbjct 1714303 GATCAACTGTGAAGAATGCTGTGGTCACTGTTCCTGCTTACTTCAATGATTCCCAGAGGC 1714244 Query 451365 AAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAAC 451424 | |||||||||||||| || |||||| ||| | ||||| | || || || ||||||| Sbjct 1714243 AGGCAACTAAAGATGCGGGTGTTATTGCCGGTCTCAATGTCATGCGTATCATCAATGAAC 1714184 Query 451425 CTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC------AGAAGaaa 451478 | | || ||||| | || ||||| || | || |||| || | || | Sbjct 1714183 CAGCTGCTGCTGCAATTGCCTATGGTCTTGACAA---GAAAGCTACTAGTGTTGGTGAGA 1714127 Query 451479 aaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTG 451538 | ||| | | | || || |||||| || || |||| ||| ||||| | |||| Sbjct 1714126 AGAATGTCCTCATTTTCGACCCTGGTGGTGGCACCTTTGATGTCTCTCTACTTACTATTG 1714067 Query 451539 AAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATA 451598 | || || ||||||| || ||||| || |||||||||||| || || || || || Sbjct 1714066 AGGAGGGTATATTTGAGGTGAAGGCCACAGCTGGTGATACTCACCTTGGTGGGGAGGACT 1714007 Query 451599 TTGATAA 451605 |||| || Sbjct 1714006 TTGACAA 1714000 Score = 102 bits (112), Expect = 3e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| ||||||||||| ||||||||||||||||| || || || || || || ||||| Sbjct 12449376 GCAGTGATTACTGTTCCTGCTTATTTCAATGATGCTCAGCGTCAGGCCACAAAGGATGCT 12449435 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | ||||| | || || |||||||| ||||| |||||||| Sbjct 12449436 GGCCGCATTGCTGGCCTTGATGTTGAGAGGATCATCAATGAACCAACAGCTGCTGCTCTG 12449495 Query 451442 GCATATGGA 451450 | |||||| Sbjct 12449496 TCTTATGGA 12449504 Score = 93.3 bits (102), Expect = 2e-13 Identities = 166/242 (69%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 451896 ATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGT--- 451952 |||| |||| ||||| || ||||| || | || || ||| |||| | || || Sbjct 1713709 ATGATGTTGTCCTTGTTGGTGGTTCGACTAGGATCCCCAAAGTTCAGCAGCTGCTGCAGG 1713650 Query 451953 -CTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCA 452011 |||||| | ||||| |||| || |||||| | |||||||||||||||||||| Sbjct 1713649 ACTTCTTCAAT----GGAAAGGAACTTTGCAAGAGCATCAATCCTGATGAAGCTGTTGCC 1713594 Query 452012 TATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGAT 452071 ||||| |||| ||||| || ||||| || | ||| | |||| || | || Sbjct 1713593 TATGGCACTGCTGTTCAGGCTGCTATCCTTAGTGGTGAGGGCAATGAGAAGGTGCAGGAC 1713534 Query 452072 ATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATG 452131 |||| | | ||||| || || | |||||||| ||||||| ||||| ||| | ||| Sbjct 1713533 CTTCTCCTCCTTGATGTGACCCCATTGTCTCTTGGTCTTGAAACTGCTGGAGGAGTCATG 1713474 Query 452132 AC 452133 || Sbjct 1713473 AC 1713472 Score = 91.5 bits (100), Expect = 6e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 248488 CATGGACAAAAAGGAACAGTTGGTATTACTTTGCCACAAAGAGATATGCCTTTCACATCA 248547 ||||||||||||||||| ||||| || |||| ||||| || ||||| | ||| Sbjct 9930071 CATGGACAAAAAGGAACTGTTGGGATGACTTACACACAAGAGGACATGCCATGGACAATT 9930012 Query 248548 GAAGGTATGACTCCAGATTTAATTTTCAATCCACATGGTATGCCTACACGTATGACTATG 248607 ||||| || || || ||| | ||| | |||||||||| ||| || | ||||||||||| Sbjct 9930011 GAAGGCATCACACCTGATATTATTGTGAATCCACATGCTATTCCATCCCGTATGACTATT 9929952 Query 248608 GGACA 248612 ||||| Sbjct 9929951 GGACA 9929947 >seq211 Length=21435 Score = 87.8 bits (96), Expect = 7e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || ||| ||||||| || || || || || || || || || Sbjct 1740 ATGCAGATCTTTGTCAAGACATTGACTGGCAAGACGATCACCCTGGAGGTGGAGAGCTCC 1799 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || ||||| || || ||||| ||||||||||| ||||| Sbjct 1800 GACACCATTGATAATGTCAAGGCCAAAATCCAGGACAAGGAGGGAATTCCTCCAGATCAG 1859 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || ||| | ||||| || || || |||||| | || ||||| ||||| || Sbjct 1860 CAGAGGCTCATCTTCGCTGGGAAGCAGCTGGAGGATGGACGTACCTTGGCAGATTACAAC 1919 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | || ||||| Sbjct 1920 ATCCAGAAGGAATCCACTCTTCA 1942 >seq7 Length=46770411 Score = 87.8 bits (96), Expect = 7e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || ||| ||||||| || || || || || || || || || Sbjct 21030831 ATGCAGATCTTTGTCAAGACATTGACTGGCAAGACGATCACCCTGGAGGTGGAGAGCTCC 21030772 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || ||||| || || ||||| ||||||||||| ||||| Sbjct 21030771 GACACCATTGATAATGTCAAGGCCAAAATCCAGGACAAGGAGGGAATTCCTCCAGATCAG 21030712 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || ||| | ||||| || || || |||||| | || ||||| ||||| || Sbjct 21030711 CAGAGGCTCATCTTCGCTGGGAAGCAGCTGGAGGATGGACGTACCTTGGCAGATTACAAC 21030652 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | || ||||| Sbjct 21030651 ATCCAGAAGGAATCCACTCTTCA 21030629 >seq2 Length=61504503 Score = 87.8 bits (96), Expect = 7e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| || || ||||| ||||| ||||| || |||| |||| | | || Sbjct 49772195 GTTCTCACCAAGATGAAGGAAACTGCAGAGGCTTACCTTGGCAAGACAGTCTCCAAGGCT 49772136 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || |||||||| || ||||||||||||||||| || || || || || || ||||| || Sbjct 49772135 GTCATTACTGTCCCAGCTTATTTCAATGATGCTCAGCGCCAGGCTACCAAGGATGCTGGT 49772076 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 |||||||| | | || | | ||||| || || || || || || |||||| || Sbjct 49772075 AGGATTGCTGGGCTGGAGGTGATGAGGATTATCAACGAGCCCACTGCTGCAGCTCTATCA 49772016 Query 451445 TATGGA 451450 |||||| Sbjct 49772015 TATGGA 49772010 Score = 84.2 bits (92), Expect = 9e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| || |||||||| || || ||||||||||| || || || || || ||||||||| Sbjct 47322819 GCAGTGATCACTGTTCCAGCATACTTCAATGATGCTCAGCGTCAGGCCACAAAAGATGCA 47322878 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | || ||||| | | ||| | || || ||||| || |||||||| ||||| Sbjct 47322879 GGCCGAATCGCTGGCCTTGAGGTTGAAAGGATCATCAATGAGCCGACAGCAGCCGCTCTT 47322938 Query 451442 GCATATGGA 451450 | |||||| Sbjct 47322939 TCCTATGGA 47322947 >seq1 Length=61571842 Score = 87.8 bits (96), Expect = 7e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || ||| ||||||| || || || || || || || || || Sbjct 52871857 ATGCAGATCTTTGTCAAGACATTGACTGGCAAGACCATCACCCTGGAGGTGGAGAGCTCC 52871798 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || ||||| || || ||||| ||||||||||| ||||| Sbjct 52871797 GACACCATTGATAATGTCAAGGCCAAAATCCAGGACAAGGAGGGAATTCCTCCAGATCAG 52871738 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || ||| | ||||| || || || |||||| | || ||||| ||||| || Sbjct 52871737 CAGAGGCTCATCTTCGCTGGGAAGCAGCTGGAGGATGGACGTACCTTGGCAGATTACAAC 52871678 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | || ||||| Sbjct 52871677 ATCCAGAAGGAATCCACTCTTCA 52871655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975511129852304