Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq9 217 1e-50 seq3 111 1e-18 seq8 91.5 1e-12 seq6 86.0 5e-11 >seq9 Length=72259479 Score = 217 bits (240), Expect = 1e-50 Identities = 564/852 (66%), Gaps = 16/852 (2%) Strand=Plus/Plus Query 517466 GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCA 517525 ||||| || ||||| || ||||| |||||| | || || || ||||| | |||| Sbjct 1713442 GGAATGGTGGTGTTCCTTGGAATAAGGACGGTCATGACTCCTCCAGCAGTTTCAAGACCA 1713501 Query 517526 AGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA 517585 ||||| | || || ||||||| |||| || | || | || |||| | |||| Sbjct 1713502 AGAGACAATGGGGTCACATCAAGGAGGAGAAGGTCCTGCACCTTCTCATTGCCCTCACCA 1713561 Query 517586 ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAA--CAG 517643 ||| ||||| || |||| ||||| ||||| |||||||||||||||||||| | | Sbjct 1713562 CTAAGGATAGCAGCCTGAACAGCAGTGCCATAGGCAACAGCTTCATCAGGATTGATGCTC 1713621 Query 517644 TTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATAC 517703 || || |||| || |||||||| || | || || || || || || || | Sbjct 1713622 TTGCAA--AGTTCCTTTCCATTGAAGAAGTCCTGCAGCAGCTGCTGAACTTTGGGGATCC 1713679 Query 517704 GAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTGAATCC 517762 || || || ||||| | |||| ||||| || ||| | ||||| | || | |||| Sbjct 1713680 TAGTCGAACCACCAACAAGGACAACATCATGGACA-GTGCTCTTATCTATCTTGGTATCC 1713738 Query 517763 AATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCG 517822 | || || || || || | | | ||| || | ||| |||||| || Sbjct 1713739 CTCAGGCACTTCTCCACAGGCTCCATGCACTTTCTGAATAGGTCCATGTTAAGTTCCTCA 1713798 Query 517823 AATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCA 517882 || | ||||| || | ||| || ||||||| ||||| | | |||||||| |||| Sbjct 1713799 AACCTGGCTCTGGTGATGGTGGAATAGAAATCAATGCCTTCATAGAGAGAATCAATTTCA 1713858 Query 517883 ATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGT 517942 |||||||| || | | |||||| |||| | ||||| | ||||||| ||||| || Sbjct 1713859 ATCGTAGTCTGGGCTGTAGAAGAAAGTGTCCTCTTAGCCCTCTCACATGAAGTCCTAAGC 1713918 Query 517943 CTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTT 518000 |||| || || | | | || | | | ||| | || | ||| | ||| || |||| Sbjct 1713919 CTTCTCAAAGCCCTGG--GGTTCCCAGTGATATCCTTCTTGTGTTTCCGCTTAAACTCTT 1713976 Query 518001 CAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTG 518060 ||| | | || | || || ||||| || || || || | | ||||| || | Sbjct 1713977 GGACAAAGTGGTTGACCAAGCGGTTGTCAAAGTCCTCCCCACCAAGGTGAGTATCACCAG 1714036 Query 518061 ACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTC 518120 || || | || | || | || || |||| || | |||| |||||| ||| | Sbjct 1714037 CTGTGGCCTTCACCTCAAATATACCCTCCTCAATAGTAAGTAGAGAGACATCAAAGGTGC 1714096 Query 518121 CACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC-----TTGGTTT-TTATCAA 518174 ||||||| || ||||| || |||||| | || | | | ||| || |||| Sbjct 1714097 CACCACCAGGGTCGAAAATGAGGACATTCTTCTCACCAACACTAGTAGCTTTCTTGTCAA 1714156 Query 518175 GACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAG 518234 ||||||| |||| |||||||||| ||||||||| || || | || ||||| ||||| | Sbjct 1714157 GACCATAGGCAATTGCAGCAGCAGCTGGTTCATTGATGATACGCATGACATTGAGACCGG 1714216 Query 518235 CAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAG 518294 |||| || ||||||||||| || || || || ||||| || || || |||||||||| Sbjct 1714217 CAATAACACCCGCATCTTTAGTTGCCTGCCTCTGGGAATCATTGAAGTAAGCAGGAACAG 1714276 Query 518295 TAATAACGGCAT 518306 | | || |||| Sbjct 1714277 TGACCACAGCAT 1714288 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | ||||||||| ||||||||||| || || ||| ||||| ||| |||||| Sbjct 12449503 CCATAAGACAGAGCAGCAGCTGTTGGTTCATTGATGATCCTCTCAACATCAAGGCCAGCA 12449444 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | || ||||| || ||||| || | || | ||| || ||||| |||||||||||| Sbjct 12449443 ATGCGGCCAGCATCCTTTGTGGCCTGACGCTGAGCATCATTGAAATAAGCAGGAACAGTA 12449384 Query 518297 ATAACGGC 518304 || || || Sbjct 12449383 ATCACTGC 12449376 >seq3 Length=64463019 Score = 111 bits (122), Expect = 1e-18 Identities = 147/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGGT- 518165 |||||| || |||||||| | ||||| || || |||||| | || | |||| Sbjct 60411654 ACATCAAAAGTACCACCACCAAGGTCAAAGATGAGGACATTCTTCTCACCAACACTGGTA 60411595 Query 518166 ----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 | |||||||||||||| |||| ||| |||||||| || ||||| || || | || Sbjct 60411594 GCCTTCTTATCAAGACCATAGGCAATAGCGGCAGCAGTCGGCTCATTGATGATACGCAGC 60411535 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 ||||| || |||||||| || ||||| || ||||| || || ||||| ||||| || Sbjct 60411534 ACATTGAGGCCAGCAATCACCCCAGCATCCTTGGTGGCCTGCCTCTGTGAGTCGTTGAAG 60411475 Query 518282 TATGCAGGAACAGTAATAACGGC 518304 || |||||||| || | ||| || Sbjct 60411474 TAGGCAGGAACTGTGACAACAGC 60411452 Score = 91.5 bits (100), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 518163 || ||||||| ||| ||||| |||| ||||| | || | | |||| || | || Sbjct 4437630 AGATACATCAAAGGTACCACCTCCCAAGTCAAACACTAGAA---TTGTTTCATTATTTT- 4437575 Query 518164 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223 | || || | |||||| || || | ||||||||||||||||| ||||| | | ||| Sbjct 4437574 --TCTTCTCGAAACCATAGGCCAATGATGCAGCAGTTGGTTCATTTATAATACGAAGAAC 4437517 Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 | || || ||||| | || |||||||| || ||| ||||||||||| || || || Sbjct 4437516 TTCCAGCCCTGCAATACGGCCAGCATCTTTTGTTGCTGTCCTTTGTGAATCATTGAAGTA 4437457 Query 518284 TGCAGGAACAGT 518295 ||| || || || Sbjct 4437456 TGCTGGGACTGT 4437445 >seq8 Length=47074253 Score = 91.5 bits (100), Expect = 1e-12 Identities = 198/292 (68%), Gaps = 7/292 (2%) Strand=Plus/Minus Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 || || |||||||| |||||||| | | ||||| || | || || | || | || Sbjct 45149338 CGGTTGTCAAAATCCTCACCTCCAAGATGAGTATCACCAGCTGTGGCAATGACCTCAAAG 45149279 Query 518081 AGTCCATCTTCAAGAGAC--AAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAA 518138 | ||||| ||||| | | ||||| || ||| ||| ||||| || | || || | Sbjct 45149278 ATACCATC--CAAGATGCTGAGAAGAGAGACGTCAAAGGTACCACCTCCAAGGTCGAAGA 45149221 Query 518139 TAAGTACAT--TCATTTCTTTGTCTTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAG 518195 ||| |||| ||||| ||| | || || ||||||||||| || | ||||||| Sbjct 45149220 CAAGAACATAGTCATTATCAAATCTAGCCTTCTTGTCAAGACCATAAGCCATTGCAGCAG 45149161 Query 518196 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 518255 |||| || ||| | ||| | | |||||| ||||||||||| ||| ||||| | | Sbjct 45149160 CAGTCGGCTCAGAGACAATACGGATAACATTGAGACCAGCAATCACTCCAGCATCCCTGG 45149101 Query 518256 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 || | || || || || ||| | | | ||||||||||| | || ||||| Sbjct 45149100 TGCCCTGCCTCTGCGAGTCGGTGGAGCAGGCAGGAACAGTGACGACAGCATC 45149049 >seq6 Length=48101398 Score = 86.0 bits (94), Expect = 5e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 668858 AAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGTACA 668917 |||||||| || |||||||||||||||||||| || ||||| ||| | || || ||||| Sbjct 3522284 AAAGAAGGCCGGATTAGAGGAAATTTGATGGGCAAGCGTGTTGATTTCTCGGCCCGTACT 3522225 Query 668918 GTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTATTGCT 668977 ||||| || | ||||| ||||| | ||||| | || || || | ||||||| Sbjct 3522224 GTTATCACACCAGATCCAAATATAAACATTGATGAACTGGGAGTACCATGGAGTATTGCT 3522165 Query 668978 AAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGAG 669022 |||||| || | | |||| || || | |||| |||||| Sbjct 3522164 TTAAATCTGACATATCCTGAAACAGTCACTCCATATAACATTGAG 3522120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780416084468728