Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7 154 2e-32 seq4 150 2e-31 >seq7 Length=46770411 Score = 154 bits (170), Expect = 2e-32 Identities = 123/148 (83%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 35944791 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 35944732 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| |||||| |||||||||||| Sbjct 35944731 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAACGA 35944672 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| |||||| Sbjct 35944671 GCTCATCTCCCGCGACGAGGGCCTCCAC 35944644 >seq4 Length=49548238 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| |||| || || || |||||||| ||||||||||| || ||||| Sbjct 42842420 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTTGAGGGCATCTTCTTCTCGGGCTCCTT 42842361 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 42842360 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 42842301 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| || ||| Sbjct 42842300 GCTCATCTCCCGCGACGAGGGCCTGCAC 42842273 Score = 127 bits (140), Expect = 3e-24 Identities = 252/366 (69%), Gaps = 8/366 (2%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | ||| | ||| ||| | ||| ||| | || || || || || Sbjct 3676912 TCAAAGCGTCCAGGCCTAAGTAAAGCGGAATCCAAGATGTCAGCTCGGTTAGTGGCAGCA 3676853 Query 15948 ATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 || |||| ||| || |||||| | ||||||||||||| || ||||| || ||||| | Sbjct 3676852 ATAACAATAATTCCAGTGTTTCCCT--CAAAACCATCCATTTCAGTCAACAGTTGGTTGA 3676795 Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 16065 ||| || |||| ||||||||| | | ||| | || | |||| | || || | Sbjct 3676794 GAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTACCAACAG 3676735 Query 16066 CATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGA 16124 ||||||| ||||||| || || ||||| || ||| | | | | ||| ||| ||| Sbjct 3676734 CATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGA 3676676 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 16184 || || || || || || ||||||||||||||||||||||| | | | | ||| || Sbjct 3676675 TCACGAACTCGGGAAGCACCAACACCAACAAACATCTCCACAAACTCAGAGCCCGAA-AT 3676617 Query 16185 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 || || || || ||| || || || ||||| || ||| || | || ||||| || Sbjct 3676616 TGAGAAAAATGGCACACCAGCCTCTCCAGCAATTGCCTTGGCAAGCAATGTTTTACCAGT 3676557 Query 16244 ACCTGG 16249 || || Sbjct 3676556 TCCAGG 3676551 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/288 (67%), Gaps = 20/288 (7%) Strand=Plus/Minus Query 15973 CAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 16032 |||| ||||||||||| ||||| ||||||||||| || || |||| || || || | Sbjct 528441 CAAAGCCATCCATCTCCGTCAAGAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTACC-- 528384 Query 16033 GCATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGA 16086 ||||||| |||| || ||| | || || |||||||||||||| ||||||| Sbjct 528383 ----ACCACCAAGGCCGGCACCACGCTGCCTCCCGACAGCATCAATCTCATCGATGAAGA 528328 Query 16087 CGATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCG 16142 | ||||| || ||| || || | || || || || || || | ||| Sbjct 528327 CAATGCAGGGCGCCTTGGCCTTGGCCTTC----TCGAAAAGGTCGCGCACCCTGGAGGCA 528272 Query 16143 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTA 16202 || ||||| || || | ||| || || | || || | || || |||||| || Sbjct 528271 CCGACACCGACGAAGAGCTCGACGAACTCTGACGCCGCGCAGGAGAAGAAGGGTACCCCG 528212 Query 16203 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250 | ||||| || | ||| || ||||| || || ||||| || || ||| Sbjct 528211 GCCTCACCAGCGACGGCACGCGCGAGCAGGGTTTTACCTGTCCCGGGC 528164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620678867015360