Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4 125 8e-24 seq7 96.9 4e-15 seq5 93.3 5e-14 >seq4 Length=49548238 Score = 125 bits (138), Expect = 8e-24 Identities = 314/474 (66%), Gaps = 6/474 (1%) Strand=Plus/Minus Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGT 11558 || |||||| || | ||||| || || |||||| || || | |||| | ||| || Sbjct 528533 CTGACGATCAAACCTTCCTGGACGCAGAAGAGCAGAGTCCAGCACATCGGGTCTGTTGGT 528474 Query 11559 AGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTG 11618 ||||||| || | | ||| | | | | || || ||||| || || | ||||| Sbjct 528473 GGCGGCAAGCACAATGACACCACTGTTGCCGGCAAAGCCATCCATCTCCGTCAAGAGCTG 528414 Query 11619 GTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA---CCTGCCGAACGCTTCTT 11675 ||| || ||||| || | ||| ||||| | | |||| || || ||||| | | Sbjct 528413 GTTAATGGTCTGCTCCCTCTCGTCGTT--ACCACC-ACCAAGGCCGGCACCACGCTGCCT 528357 Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTC 11735 |||||||| ||||||||||||||||| || || || || ||||| |||| || Sbjct 528356 CCCGACAGCATCAATCTCATCGATGAAGACAATGCAGGGCGCCTTGGCCTTGGCCTTCTC 528297 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 |||||| || || || | || || ||||| ||||| | ||| ||||| | || || Sbjct 528296 GAAAAGGTCGCGCACCCTGGAGGCACCGACACCGACGAAGAGCTCGACGAACTCTGACGC 528237 Query 11796 AGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 | || | |||||| || | ||||||||||| ||| || ||||| || || || Sbjct 528236 CGCGCAGGAGAAGAAGGGTACCCCGGCCTCACCAGCGACGGCACGCGCGAGCAGGGTTTT 528177 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAA 11915 ||| || || || | || | || || || ||||||||||||||| | Sbjct 528176 ACCTGTCCCGGGCGGGCCGACCAGGAGACATCCCTTGGGGATCTTGGCACCCAGAGCGGT 528117 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 ||| || || ||||||||||| || || | ||||| || || |||||| Sbjct 528116 GTACTTGTCCGGGTTCTTGAGGAAATCGACGACCTCCTGCAGCTCGAGCTTGGC 528063 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 42842274 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCG 42842333 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 42842334 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCAACGCAG 42842393 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| || ||||| || || Sbjct 42842394 GCGAAGGCGACGAGGCGCTCGGCGAA 42842419 >seq7 Length=46770411 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 35944645 TGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGGCCG 35944704 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 35944705 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAG 35944764 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| || ||||| || || Sbjct 35944765 GCGAAGGCGACGAGGCGCTCGGCGAA 35944790 >seq5 Length=59822759 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 ||||| ||| ||||| | ||||||||||| || ||||| |||||||| ||||| || Sbjct 16578411 CGTCGACTGTATATGTTGGATGTGTAGGGTTCAAAGCACTCGTTGTTGCCAAGGATCTGA 16578352 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 ||||||||| |||||||| ||||| | |||||| |||||| || Sbjct 16578351 CTAGTGGAAGCAGTGGGCATTGGAGCAACAAGAAGAGTGTTTCTGA 16578306 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 11686 TCAATCTCATCGATGAATACGATACACGGTTGG--TTGGCACGTGCCTGTTCGAA-AAGT 11742 ||||| ||||| |||||||| |||| ||| | ||| | | || | || || |||| Sbjct 5775467 TCAATTTCATCAATGAATACAATACTAGGTGCGCATTGTC--GAGCTTCTTGAAATAAGT 5775410 Query 11743 TCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACAC 11802 || || || | | ||||||||| || ||| |||| ||||| | || ||||| | Sbjct 5775409 TC-CGCACCCTGGATGGTCCAACACCAACAAACCTCTCCACGAAATCTGAACCAGAA-AT 5775352 Query 11803 TGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGT 11861 || | |||||||||| |||||| || ||| ||||| ||| ||||| || || ||||| Sbjct 5775351 AGACAAAAAGGGAACATCAGACTCTCCTGCGGTGGCTTTAGCAAGGAGTGTTTTCCCCGT 5775292 Query 11862 ACCAGGTGCACCAGCGAGAAGGGCGCC 11888 |||||| | || | ||||| || || Sbjct 5775291 ACCAGGGGGGCCCACAAGAAGAGCACC 5775265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588915718306400