Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4 132 6e-26 seq7 118 1e-21 >seq4 Length=49548238 Score = 132 bits (146), Expect = 6e-26 Identities = 251/365 (69%), Gaps = 6/365 (2%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | ||| | ||| ||| | ||| ||| | || || || || || Sbjct 3676912 TCAAAGCGTCCAGGCCTAAGTAAAGCGGAATCCAAGATGTCAGCTCGGTTAGTGGCAGCA 3676853 Query 9255 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9312 || |||| ||| || |||||| | ||||||||||||| || ||||| |||||||| | Sbjct 3676852 ATAACAATAATTCCAGTGTTTCCCT--CAAAACCATCCATTTCAGTCAACAGTTGGTTGA 3676795 Query 9313 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 9372 ||| || |||| ||||||||| | | ||| | || | |||| | || || | Sbjct 3676794 GAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTACCAACAG 3676735 Query 9373 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 9432 ||||||| ||||||| || || || || || ||| || ||| | | || |||| Sbjct 3676734 CATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAAAGAT 3676675 Query 9433 CGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9492 | ||||| | || || ||||||||||||||||||||||| | | | | ||| ||| Sbjct 3676674 CACGAACTCGGGAAGCACCAACACCAACAAACATCTCCACAAACTCAGAGCCCGAA-ATT 3676616 Query 9493 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9551 | || || || ||| || || || ||||| || ||| || | || ||||| || Sbjct 3676615 GAGAAAAATGGCACACCAGCCTCTCCAGCAATTGCCTTGGCAAGCAATGTTTTACCAGTT 3676556 Query 9552 CCTGG 9556 || || Sbjct 3676555 CCAGG 3676551 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 42842273 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 42842332 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 42842333 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCAACGCA 42842392 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | ||||||||||||||| Sbjct 42842393 GGCGAAGGCGACGAGGCGCTCGGCGAAG 42842420 Score = 111 bits (122), Expect = 2e-19 Identities = 279/420 (66%), Gaps = 18/420 (4%) Strand=Plus/Minus Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244 || || ||||||||| | |||||||| || || || || || | ||| | || Sbjct 528536 GACCTGACGATCAAACCTTCCTGGACGCAGAAGAGCAGAGTCCAGCACATCGGGTCTGTT 528477 Query 9245 CGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9302 || ||||| | |||| | ||| |||| | |||| ||||||||||| ||||| Sbjct 528476 GGTGGCGGCAAGCACAATGACACCACTGTTGCCGG--CAAAGCCATCCATCTCCGTCAAG 528419 Query 9303 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA------GCACTG 9356 || |||||||| || || |||| || || || | ||||||| |||| Sbjct 528418 AGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTACC------ACCACCAAGGCCGGCACCA 528365 Query 9357 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGG 9416 || ||| | || || |||||||||||||| ||||||||||| || || || | | Sbjct 528364 CGCTGCCTCCCGACAGCATCAATCTCATCGATGAAGACAATGCAGGGCGCCTTGGCCTTG 528305 Query 9417 GCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAG 9476 || | || || || ||||| ||||| ||| || ||||| || || | ||| || || Sbjct 528304 GCCTTCTCGAAAAGGTCGCGCACCCTGGAGGCACCGACACCGACGAAGAGCTCGACGAAC 528245 Query 9477 TTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGA 9536 | || || | || || |||||| || | ||||| || | ||| || ||||| Sbjct 528244 TCTGACGCCGCGCAGGAGAAGAAGGGTACCCCGGCCTCACCAGCGACGGCACGCGCGAGC 528185 Query 9537 AGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC 9595 || || ||||| || || ||| || | |||| | || ||| | || |||||||| || Sbjct 528184 AGGGTTTTACCTGTCCCGGGCGGGCCGACCAGGA-GACATCCCTTGGGGATCTTGGCACC 528126 Score = 82.4 bits (90), Expect = 9e-11 Identities = 156/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || |||||||| ||||||||||| ||||| |||| || || | ||| | || Sbjct 46296019 TGGGGCCTTGGTGTGCCAGCATTGAAAAGGGTCGGTGAGGCATGTGTAAACCAGCGCTGA 46296078 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 ||||| | |||||||| | | |||| |||||||||||| ||| || || | | Sbjct 46296079 GACATGAGATGGTATGTCTTTATGGCAGACTCAATGTCTTCCTTGTGTATTCCCACTGAA 46296138 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 107345 || | ||| | ||||| ||| || |||| | | | || | ||| || |||| | Sbjct 46296139 ACCCTCATTAGCATGTGTTGTGGCCTTTCAACAACCTTCCCCGCAAGC--TTCAAGAGGT 46296196 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 | | ||||||| || |||| |||||||| || |||| |||||| Sbjct 46296197 AAGACCTCTCAAGAGTCTTGAAGCCAAAGTAGTCATAATCGAAGTCCC 46296244 >seq7 Length=46770411 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 35944644 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGGCC 35944703 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 35944704 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 35944763 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | ||||||||||||||| Sbjct 35944764 GGCGAAGGCGACGAGGCGCTCGGCGAAG 35944791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589920415465120