Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2 178 1e-39 seq4 150 2e-31 >seq2 Length=61504503 Score = 178 bits (196), Expect = 1e-39 Identities = 300/430 (70%), Gaps = 7/430 (2%) Strand=Plus/Minus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGT 169502 || ||||| |||||| | ||||| || |||| | || ||| | | ||| || || | Sbjct 2078301 GGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTAT 2078243 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 || ||||| || || ||||| || ||||| || || || | || || || | ||||| Sbjct 2078242 CGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTC 2078183 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 ||| | ||||| ||||| || ||||||||||| || |||| | || || ||||| Sbjct 2078182 TTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGG 2078123 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 | | ||||| |||||||| |||||||| ||| |||||||||| ||||| || ||||| || Sbjct 2078122 ATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGG 2078063 Query 169683 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACA 169742 |||||| || | | | | |||||| | ||||| | | || ||||| | | Sbjct 2078062 CCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 2078003 Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802 ||||||||| | | | | || |||||||||||||| ||||||||| || || || Sbjct 2078002 GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 2077943 Query 169803 AGTATCTGCTGCATTCGCTGTATTCTTAGTATACCC-AT----TTGGTCAGGGTTCATTC 169857 || | ||||| ||||| ||||| | |||| || ||||||| || || Sbjct 2077942 TGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTCTATTGGTCAAGGAAGTTTT 2077883 Query 169858 TCTGATGGTA 169867 ||||||| || Sbjct 2077882 TCTGATGCTA 2077873 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | |||||||||||| || || ||||| || || ||||||||||| || Sbjct 2076789 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGC 2076848 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || |||||||| ||||||||| || Sbjct 2076849 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 2076908 Query 170649 GTTACATCATGGTATACACATGG 170671 || || || |||||||| ||||| Sbjct 2076909 GTAACTTCTTGGTATACCCATGG 2076931 >seq4 Length=49548238 Score = 150 bits (166), Expect = 2e-31 Identities = 220/311 (71%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 169558 GGTTCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCT 169617 |||||||| | ||||| ||||| || ||||||||||| || |||| | || || Sbjct 24272525 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCG 24272584 Query 169618 ATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAAT 169677 |||||| | ||||| |||||||| |||||||| ||| |||||||||| ||||| || ||| Sbjct 24272585 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 24272644 Query 169678 GGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGA 169737 || || |||||| || | | | | |||||| | ||||| | | || ||||| Sbjct 24272645 GGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 24272704 Query 169738 AGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCT 169797 |||||||||| | | | | || |||||||||||||| ||||||||| || Sbjct 24272705 CATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCA 24272764 Query 169798 GCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTC 169857 || || || | ||||| ||||| ||||| | |||| ||||||| || || Sbjct 24272765 GCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTT 24272824 Query 169858 TCTGATGGTAT 169868 ||||||| ||| Sbjct 24272825 TCTGATGCTAT 24272835 Score = 86.0 bits (94), Expect = 7e-12 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | |||||||||||| || || | ||| || || ||||||||||| || Sbjct 21863120 TTTGATATTATGGACGACTGGTTACGAAGGGACCTTTTCGTTTTTATAGGATGGTCCGGC 21863061 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAAT-CGGTGGTTGGTTCTTAGGGACTACCTT 170647 || || || | |||||||| || | | | || |||||||| ||||||||| || Sbjct 21863060 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAAGGGGGTTGGTTTACAGGGACTACTTT 21863001 Query 170648 CGTTACATCATGGTATACACATGG 170671 || || || |||||||| ||||| Sbjct 21863000 TGTAACTTCTTGGTATACCCATGG 21862977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579153517569920