Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq2 232 8e-56 seq4 159 4e-34 >seq2 Length=61504503 Score = 232 bits (256), Expect = 8e-56 Identities = 338/471 (72%), Gaps = 9/471 (2%) Strand=Plus/Minus Query 167863 TTCTGCGAGTGGGTAAC-ATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 |||||| | ||| |||| | || | || ||||| || || |||| |||||||| || | Sbjct 2078343 TTCTGCAACTGGATAACTAGCACCGAA-AACCGTCTTTACATCGGATGGTTCGGTGTTTT 2078285 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 |||||| || || | ||| | |||||| ||||| || || |||| ||| ||||||| | Sbjct 2078284 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCC 2078226 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || || || || || || ||||| || || ||||||| | | ||||| |||| Sbjct 2078225 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 2078166 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 | || ||||||||||| || | ||| ||||| || || ||| | ||||| || || | Sbjct 2078165 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 2078106 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 | |||||||| ||||| | ||||||||||| || || || || |||| | ||| | | Sbjct 2078105 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 2078046 Query 168161 TCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATC 168220 | | |||||| | | ||| | | || ||||| ||||| ||||||||| | | Sbjct 2078045 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 2077986 Query 168221 GTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTG 168280 || | ||||||||||| ||||| ||||||||| || || || || || || || | || Sbjct 2077985 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 2077926 Query 168281 CAGTATTCCT-AGTG----TATCCTTTCGGTCAAGGTAGTTTCTCTGATGC 168326 | || ||| | | || ||| || | |||||||| ||||| |||||||| Sbjct 2077925 CTGTTTTCTTGATTGACCCTATTCTATTGGTCAAGGAAGTTTTTCTGATGC 2077875 >seq4 Length=49548238 Score = 159 bits (176), Expect = 4e-34 Identities = 223/313 (71%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 168017 CTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATG 168076 ||||||| | | ||||| ||||| || ||||||||||| || | ||| ||||| | Sbjct 24272523 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 24272582 Query 168077 CTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATA 168136 | || ||| | ||||| || || || |||||||| ||||| | ||||||||||| || | Sbjct 24272583 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 24272642 Query 168137 ACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGCATACATGG 168196 | || || |||| | ||| | || | |||||| | | ||| | | || |||| Sbjct 24272643 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGG 24272702 Query 168197 GACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACT 168256 | | ||| ||||||||| | ||| | ||||||||||| ||||| ||||||||| | Sbjct 24272703 GTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 24272762 Query 168257 CTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTT 168316 | || || || || || || | ||| || ||| | | | ||| | |||||||| |||| Sbjct 24272763 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTT 24272822 Query 168317 TCTCTGATGCAAT 168329 | |||||||| || Sbjct 24272823 TTTCTGATGCTAT 24272835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574414802627040