Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq2 253 2e-62 seq4 161 1e-34 seq8 105 7e-18 >seq2 Length=61504503 Score = 253 bits (280), Expect = 2e-62 Identities = 333/456 (73%), Gaps = 9/456 (2%) Strand=Plus/Minus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||| | ||| | ||| ||| | ||||| || || | || |||||||| ||| || Sbjct 2078343 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 2078284 Query 163845 ATGATCCCTACGCTGCTTG-CAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163902 ||||||||||| || ||| | ||||| ||||| || || |||| ||| ||||||| | Sbjct 2078283 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCC 2078226 Query 163903 CCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACA 163962 | || || || || |||||||||||||| |||||| | ||||| | | ||||| |||| Sbjct 2078225 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 2078166 Query 163963 ACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCA 164022 | || ||||||||||| || |||| | || || || || | ||||| ||||| | Sbjct 2078165 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 2078106 Query 164023 TTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCG 164082 |||||||||| ||||| ||||||| ||| | ||||| || || |||| | || | | Sbjct 2078105 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 2078046 Query 164083 TCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACC 164142 | | |||||| | | ||| | | || |||||||||||||||||||| || || Sbjct 2078045 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 2077986 Query 164143 GTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCG 164202 |||| |||||||||||||||||| |||||| || || || || |||||||| || | | Sbjct 2077985 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 2077926 Query 164203 CAGTCTTCCTGGT-----CTATCCTTTCGGTCAAGG 164233 | || ||| || | |||| || | |||||||| Sbjct 2077925 CTGTTTTCTTGATTGACCCTATTCTATTGGTCAAGG 2077890 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 || |||||| | | | || |||||||||||| | || ||||| || || | || ||| Sbjct 2076801 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGCCTATTGCTCTTT 2076860 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||||||| | ||| | || |||||| |||| ||||||||||| | || |||| Sbjct 2076861 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 2076920 Query 165326 TATACTCACGGGTTGGCAAGTTCCTA 165351 ||||| || || ||||| |||||||| Sbjct 2076921 TATACCCATGGATTGGCTAGTTCCTA 2076946 >seq4 Length=49548238 Score = 161 bits (178), Expect = 1e-34 Identities = 215/299 (72%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 163953 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCAC 164012 ||||| ||||| || ||||||||||| || |||| | || || || || | ||| Sbjct 24272537 TATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCGATCGGATTGCAC 24272596 Query 164013 TTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTC 164072 || ||||| ||||||||||| ||||| ||||||| ||| | ||||| || || |||| Sbjct 24272597 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTAT 24272656 Query 164073 CAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAA 164132 | || | || | |||||| | | ||| | | || ||||||| |||||||||| Sbjct 24272657 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAA 24272716 Query 164133 CTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCA 164192 || || |||||| |||||||||||||||||| |||||| || || || || |||||| Sbjct 24272717 CTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCA 24272776 Query 164193 GCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAAT 164251 || || | || || ||| || | | ||| | |||||||| || ||||| || || Sbjct 24272777 GCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGCTAT 24272835 Score = 86.0 bits (94), Expect = 7e-12 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 || |||||| | | | || | |||||||||| | || ||||| || || | || ||| Sbjct 21863108 GACGACTGGTTACGAAGGGACCTTTTCGTTTTTATAGGATGGTCCGGCCTATTGCTCTTT 21863049 Query 165266 CCCACTGCTTATCTTGCTATT-GGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTG 165324 || ||||||| | ||| | || |||||| |||| ||||||||||| | || ||| Sbjct 21863048 CCTTGTGCTTATTTCGCTTTAAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTG 21862989 Query 165325 GTATACTCACGGGTTGGCAAGTTCCTA 165351 |||||| || || ||||| |||||||| Sbjct 21862988 GTATACCCATGGATTGGCTAGTTCCTA 21862962 >seq8 Length=47074253 Score = 105 bits (116), Expect = 7e-18 Identities = 128/169 (76%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAAC 163870 ||||| || || | || ||||| || ||| ||||||||||||| || ||| | ||||| Sbjct 5860688 AACCGTCTTTACATCGGATGGTTAGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 5860630 Query 163871 CATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTG 163929 || || || || |||||||| |||||||||| || || || || ||||||||||||| Sbjct 5860629 T-TCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTG 5860571 Query 163930 AACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGC 163978 | |||||| ||||| | | ||||| || || || |||||||||| Sbjct 5860570 AGCCTGTTTTTGGTTCTTTACTTTATGGAAATAATATTGTCTCTGGTGC 5860522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556867798746720