Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq2 203 4e-47 seq4 143 3e-29 >seq2 Length=61504503 Score = 203 bits (224), Expect = 4e-47 Identities = 340/486 (70%), Gaps = 8/486 (2%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | ||| |||| ||||| | ||| | ||||| | || ||||||||||| || Sbjct 2078343 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 2078284 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| | || || || ||||| || Sbjct 2078283 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATCGCTGCCCC 2078225 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | || ||||| | ||| || || | ||||||||||| Sbjct 2078224 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 2078165 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || ||||| ||||| || |||| |||| || ||||| | ||||| |||||||| Sbjct 2078164 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 2078105 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||| || | | |||||||||||||| ||||| || ||||| || | | | Sbjct 2078104 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 2078045 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | || || |||||| | |||||||| | | | | Sbjct 2078044 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 2077985 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 || |||||| | |||||||| |||||| |||||||| || || | || || ||| Sbjct 2077984 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 2077925 Query 168910 AGTATTCCTTGTATACCC-AT----TTGGTCAGGGTTCTTTCTCTGATGGTA-TGCCTCT 168963 || ||| | | |||| || ||||||| || ||| ||||||| || |||| | Sbjct 2077924 TGTTTTCTTGATTGACCCTATTCTATTGGTCAAGGAAGTTTTTCTGATGCTACAGCCTTT 2077865 Query 168964 AGGAAT 168969 || ||| Sbjct 2077864 AGAAAT 2077859 >seq4 Length=49548238 Score = 143 bits (158), Expect = 3e-29 Identities = 227/324 (70%), Gaps = 1/324 (0%) Strand=Plus/Plus Query 168647 GGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCA 168706 ||| || || | ||||||||||| || ||||| ||||| || |||| |||| || Sbjct 24272525 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCG 24272584 Query 168707 ATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAAT 168766 ||||| | ||||| ||||||||||||||||| || | | |||||||||||||| ||| Sbjct 24272585 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 24272644 Query 168767 GGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGT 168826 || || ||||| || | | | | |||||| || | || | || || |||||| Sbjct 24272645 GGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 24272704 Query 168827 AGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCA 168886 |||||||| | | | | || |||||| | |||||||| |||||| |||||| Sbjct 24272705 CATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCA 24272764 Query 168887 GCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTC 168946 || || || | || || ||| || ||| | | |||| ||||||| || ||| Sbjct 24272765 GCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTT 24272824 Query 168947 TCTGATGGTAT-GCCTCTAGGAAT 168969 ||||||| ||| |||| ||| ||| Sbjct 24272825 TCTGATGCTATAGCCTTTAGAAAT 24272848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564383829402240