Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2 156 5e-33 seq4 120 4e-22 >seq2 Length=61504503 Score = 156 bits (172), Expect = 5e-33 Identities = 290/426 (68%), Gaps = 0/426 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 |||||| | ||| |||| || | ||| | |||| | || ||||||||||| | Sbjct 2078343 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 2078284 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | || ||| | | || || | || ||||| || || ||| Sbjct 2078283 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCT 2078224 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || ||||| || || || | || || ||| | |||||||| | ||||| ||||| Sbjct 2078223 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAAT 2078164 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || ||||||||||| || |||| | || || || || | ||||| ||||| || Sbjct 2078163 ATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATT 2078104 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| ||| | || ||||| ||||| |||||||| || |||||| || | | | Sbjct 2078103 TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTT 2078044 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | |||||| | | ||| | | || ||||| | |||||||||| | | | Sbjct 2078043 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 2077984 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 | |||||| | || ||||| ||| ||||||||||| ||||| |||| || |||| Sbjct 2077983 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 2077924 Query 172240 GTGTTC 172245 || ||| Sbjct 2077923 GTTTTC 2077918 Score = 102 bits (112), Expect = 1e-16 Identities = 112/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | |||||||||||| || || |||||||| || || |||||||| || Sbjct 2076789 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGC 2076848 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | ||||||||||| | || | || |||||||| ||| ||||| || Sbjct 2076849 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 2076908 Query 173071 GTTACATCATGGTATACACATGGTATTG 173098 || || || |||||||| ||||| |||| Sbjct 2076909 GTAACTTCTTGGTATACCCATGG-ATTG 2076935 >seq4 Length=49548238 Score = 120 bits (132), Expect = 4e-22 Identities = 213/311 (68%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 171976 GGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCA 172035 |||||||| | ||||| ||||| || ||||||||||| || |||| | || || Sbjct 24272525 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCG 24272584 Query 172036 ATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAAT 172095 || || | ||||| ||||| || |||||||| ||| | || ||||| ||||| |||||| Sbjct 24272585 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 24272644 Query 172096 GGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGA 172155 || || |||||| || | | | | |||||| | | ||| | | || ||||| Sbjct 24272645 GGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 24272704 Query 172156 AGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCA 172215 |||||||||| | | | | |||||| | || ||||| ||| ||||||||| Sbjct 24272705 CATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCA 24272764 Query 172216 GCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTC 172275 || ||||| |||| || |||||| ||| | | | || | ||||| || || Sbjct 24272765 GCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTT 24272824 Query 172276 TCTGATGGTAT 172286 ||||||| ||| Sbjct 24272825 TCTGATGCTAT 24272835 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | |||||||||||| || || | |||||| || || |||||||| || Sbjct 21863120 TTTGATATTATGGACGACTGGTTACGAAGGGACCTTTTCGTTTTTATAGGATGGTCCGGC 21863061 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTAT-CGGTGGTTGGTTCTTAGGAACTACCTT 173069 || || || | ||||||||||| | || | || |||||||| ||| ||||| || Sbjct 21863060 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAAGGGGGTTGGTTTACAGGGACTACTTT 21863001 Query 173070 CGTTACATCATGGTATACACATGGTATTG 173098 || || || |||||||| ||||| |||| Sbjct 21863000 TGTAACTTCTTGGTATACCCATGG-ATTG 21862973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587991012959680