Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq2 185 1e-41 seq4 141 1e-28 seq2151 87.8 3e-12 >seq2 Length=61504503 Score = 185 bits (204), Expect = 1e-41 Identities = 312/450 (69%), Gaps = 5/450 (1%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| | || ||||| ||||| | ||||| ||| | | | | Sbjct 2078322 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 2078263 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||||||||| ||||| || ||||| || || || Sbjct 2078262 GCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATT 2078203 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | ||||| ||| ||||||||||| | ||||| ||||| || ||||||||||| || | Sbjct 2078202 CGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATT 2078143 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || |||||||| ||||| ||||| || |||||||| ||| | ||||| Sbjct 2078142 CCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 2078083 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 || ||| | |||||||| || |||| | || || | | |||||| | ||||| | Sbjct 2078082 GAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 2078023 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || || || | ||||||||||| || | | | |||||| | |||||||| Sbjct 2078022 GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATT 2077963 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCC-ATT 215733 |||||| || || || ||||| | ||||| ||| || ||| | | | || ||| Sbjct 2077962 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATT 2077903 Query 215734 C----GGTCAGGGTTCTTTCTCTGATGCTA 215759 | ||||| || ||| |||||||||| Sbjct 2077902 CTATTGGTCAAGGAAGTTTTTCTGATGCTA 2077873 >seq4 Length=49548238 Score = 141 bits (156), Expect = 1e-28 Identities = 219/313 (70%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 215448 CTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACG 215507 ||||||||||| | ||||| ||||| || ||||||||||| || | |||| ||| | Sbjct 24272523 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 24272582 Query 215508 CAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACA 215567 | |||||||| ||||| ||||| || |||||||| ||| | ||||| || ||| | |||| Sbjct 24272583 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 24272642 Query 215568 ATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCG 215627 |||| || |||| | || || | | |||||| | ||||| | || || | Sbjct 24272643 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGG 24272702 Query 215628 GAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACT 215687 | ||||||||||| || | | | |||||| | |||||||| |||||| || | Sbjct 24272703 GTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 24272762 Query 215688 CCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTT 215747 | || ||||| | ||||| ||| || ||| | | | || | ||||| || || Sbjct 24272763 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTT 24272822 Query 215748 TCTCTGATGCTAT 215760 | ||||||||||| Sbjct 24272823 TTTCTGATGCTAT 24272835 >seq2151 Length=3468 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 215448 CTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACG 215507 ||||||||||| | ||||| ||||| || ||||||||||| || | |||| ||| | Sbjct 3366 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 3425 Query 215508 CAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCA 215545 | |||||||| ||||| ||||| || |||||||| ||| Sbjct 3426 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCA 3463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745005340898240