Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq2 215 6e-51 seq4 147 3e-30 seq8 84.2 3e-11 >seq2 Length=61504503 Score = 215 bits (238), Expect = 6e-51 Identities = 326/458 (71%), Gaps = 13/458 (3%) Strand=Plus/Minus Query 181794 TTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTG 181853 |||||| | ||| | || ||| | || ||||| || |||| ||||| ||||| || Sbjct 2078343 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 2078284 Query 181854 ATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 181912 |||||||| || | ||| | ||||| ||||| || || | |||||| | || || || Sbjct 2078283 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 2078225 Query 181913 TCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAA 181972 ||| || ||||| || ||||| || || || || ||||||| | | ||||| ||||| Sbjct 2078224 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 2078165 Query 181973 CATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAAT 182032 || ||||||||||| || | || | || || || || | ||||| |||||||| Sbjct 2078164 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 2078105 Query 182033 CTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGT 182092 ||||||||||| || ||||||||||| | || || || || |||| | || |||| Sbjct 2078104 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 2078045 Query 182093 TTTCCACTTCCTGATCGGCATCTACGC---CTACATGGGACGTGAGTGGGAACTTTCTTA 182149 | | |||||| | | || | || || || ||||| ||||||||||||||| || Sbjct 2078044 TCTACACTTCTTACTTGG--TGTA-GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTT 2077988 Query 182150 CCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATC 182209 ||| | ||||||||||| ||||| ||| ||||| || ||||| || || || || | Sbjct 2077987 CCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 2077928 Query 182210 TGCTGTATTCTT-----AGTCTATCCTTTCGGTCAAGG 182242 |||||| ||||| | |||| || | |||||||| Sbjct 2077927 TGCTGTTTTCTTGATTGACCCTATTCTATTGGTCAAGG 2077890 >seq4 Length=49548238 Score = 147 bits (162), Expect = 3e-30 Identities = 224/316 (71%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 181948 CTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACG 182007 ||||||| | | ||||| ||||| || ||||||||||| || | || | || | Sbjct 24272523 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 24272582 Query 182008 CAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATA 182067 | || || | ||||| |||||||| ||||||||||| || ||||||||||| | || | Sbjct 24272583 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 24272642 Query 182068 ACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC---CTACA 182124 | || || |||| | || ||||| | |||||| | | || | || || || | Sbjct 24272643 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGTTATA 24272699 Query 182125 TGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCAT 182184 |||| | ||||||||||||| || ||| | ||||||||||| ||||| ||| |||| Sbjct 24272700 TGGGTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCAT 24272759 Query 182185 ACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTT 182244 | || ||||| || || || || ||||||| ||||| | | ||| | |||||||| Sbjct 24272760 ATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAA 24272819 Query 182245 CGTTCTCCGATGCAAT 182260 || || ||||| || Sbjct 24272820 GTTTTTCTGATGCTAT 24272835 >seq8 Length=47074253 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 181815 ACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCG 181874 ||| | || ||||| || |||| ||||| ||||| |||||||||| || | ||| | Sbjct 5860694 ACCGAAAACCGTCTTTACATCGGATGGTTAGGTGTTTTGATGATCCCTACCTTATTGACC 5860635 Query 181875 GCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTAT 181933 ||||| || || || || | || ||| | || || ||||| || ||||| || ||||| Sbjct 5860634 GCAACT-TCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTAT 5860576 Query 181934 CCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTT 181991 || || || || |||||| | | ||||| || || || ||||||||||| || Sbjct 5860575 TCGTGAGCCTGTTTTTGGTTCTTTACTTTATGGAAATAATATTGTCTCTGGTGCTATT 5860518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611633392914400