Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq2 322 5e-83 seq4 224 1e-53 seq8 116 4e-21 >seq2 Length=61504503 Score = 322 bits (356), Expect = 5e-83 Identities = 356/472 (75%), Gaps = 7/472 (1%) Strand=Plus/Minus Query 164764 TTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTT 164823 || ||| | ||| | ||| |||| | ||||||||||| |||| |||||||||||| | Sbjct 2078343 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 2078284 Query 164824 ATGATCCCCTGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCC 164882 |||||||| || | |||| || | ||| ||||||| || ||||||||||| || Sbjct 2078283 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 2078225 Query 164883 CCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAA 164942 || || || ||||||||||||||||| ||||| | |||||| || | || || ||||| Sbjct 2078224 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 2078165 Query 164943 CATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTAT 165002 || ||||||||||| | |||| ||||| || |||||| | ||||| || || || Sbjct 2078164 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 2078105 Query 165003 TTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGT 165062 ||||||||||||| | | ||||| ||||| ||||| || || ||||| || | |||| Sbjct 2078104 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 2078045 Query 165063 CTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 165122 | |||||| | | ||||||||||| || |||||||||||||||||||| || ||| Sbjct 2078044 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 2077985 Query 165123 CCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGC 165182 || |||||||||||||||||| || |||||| || ||||| || |||||| | || Sbjct 2077984 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 2077925 Query 165183 AGTTTTCCTGGT-----CTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTA 165229 |||||| || | |||| || | |||||||| ||||| ||||||| || Sbjct 2077924 TGTTTTCTTGATTGACCCTATTCTATTGGTCAAGGAAGTTTTTCTGATGCTA 2077873 Score = 100 bits (110), Expect = 3e-16 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 164990 ACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTT 165049 |||| || | |||| | |||||||| | | |||||||||| || || || ||||||| Sbjct 9855160 ACTTTTACTCAATTTAGAAAGCTGCACCTGTTAATGAATGGTTATATAATGGCGGTCCTT 9855101 Query 165050 ACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGG 165109 | || | |||| | || || | | ||||||||||| || |||| | ||||||||| Sbjct 9855100 ATGAGCTAATTGTTCTATACCTCTTGCTTGGTGTAGCTTGTTATATGGTTTGTGAGTGGG 9855041 Query 165110 AACTGTCTTACCGCCTCGGTATGCGTCCTTGGAT--TTGC-GTAGCATATAGCGCACCTG 165166 |||| || || || ||||||||| ||| ||| |||| | |||||| || |||| Sbjct 9855040 AACTTAGTTTCCATCTAGGTATGCGTACTTAGATTGTTGCTGCTGCATATTCAGCTCCTG 9854981 Query 165167 TCGCTGCTGCTGCCGCAGTTTTCCTG 165192 || |||||| | | |||||| || Sbjct 9854980 ATGCAGCTGCTACTGTTGTTTTCTTG 9854955 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 166173 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTT 166232 ||||||||| | | | || |||||||||||| | || ||||| || || | || || Sbjct 2076801 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGCCTATTGCTCTTT 2076860 Query 166233 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGG 166292 || ||||||| | ||| | || |||||| | || ||||||||||| || || |||| Sbjct 2076861 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 2076920 Query 166293 TATACTCATGGACTCGCAAG 166312 ||||| |||||| | || || Sbjct 2076921 TATACCCATGGATTGGCTAG 2076940 >seq4 Length=49548238 Score = 224 bits (248), Expect = 1e-53 Identities = 240/316 (76%), Gaps = 1/316 (0%) Strand=Plus/Plus Query 164920 GGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCA 164979 |||||| || | || || ||||| || ||||||||||| | |||| ||||| || Sbjct 24272525 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCG 24272584 Query 164980 ATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAAC 165039 |||||| | ||||| || || ||||||||||||||| | | ||||| ||||| ||||| Sbjct 24272585 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 24272644 Query 165040 GGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGT 165099 || || ||||| || | |||| | |||||| | | ||||||||||| || |||||| Sbjct 24272645 GGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 24272704 Query 165100 CGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGC 165159 | |||||||||||| || ||| || |||||||||||||||||| || |||||| Sbjct 24272705 CATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCA 24272764 Query 165160 GCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTC 165219 || ||||| || |||||| | || |||||| || | | ||| | |||||||| ||||| Sbjct 24272765 GCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTT 24272824 Query 165220 TCTGATGGTAT-GCCT 165234 ||||||| ||| |||| Sbjct 24272825 TCTGATGCTATAGCCT 24272840 >seq8 Length=47074253 Score = 116 bits (128), Expect = 4e-21 Identities = 133/176 (76%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 164784 CACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGC 164843 |||| | ||||||||||| |||| ||||| |||||| | |||||||| || | | Sbjct 5860695 CACCGAAAACCGTCTTTACATCGGATGGTTAGGTGTTTTGATGATCCCTACCTTATTGAC 5860636 Query 164844 CGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTA 164902 ||| || | || ||||||| || |||||||||||||| || || || |||||||||| Sbjct 5860635 CGCAACT-TCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTA 5860577 Query 164903 TTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCT 164958 ||||||| ||||| |||||| || | || || || || || ||||||||||| Sbjct 5860576 TTCGTGAGCCTGTTTTTGGTTCTTTACTTTATGGAAATAATATTGTCTCTGGTGCT 5860521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563603109317120