Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq2 206 3e-48 seq4 150 2e-31 >seq2 Length=61504503 Score = 206 bits (228), Expect = 3e-48 Identities = 321/457 (70%), Gaps = 5/457 (1%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || | || ||||||||||| ||||||||||| Sbjct 2078334 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 2078275 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| | ||||||||||| || || || || || Sbjct 2078274 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGAT 2078215 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | || ||||| | ||||| || | ||||| ||||| || |||||| Sbjct 2078214 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCT 2078155 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || ||||| | ||||| || || ||||||||||| Sbjct 2078154 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 2078095 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| || | ||||||||||| || || || || |||||| | || || | | |||||| Sbjct 2078094 GCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTC 2078035 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || || |||||| | |||||||||| | |||| | |||||| Sbjct 2078034 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 2077975 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTT- 170117 ||||||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 2077974 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTG 2077915 Query 170118 AGTG----TATCCTTTCGGTCAGGGATCTTTCTCAGA 170150 | || ||| || | ||||| ||| ||| || || Sbjct 2077914 ATTGACCCTATTCTATTGGTCAAGGAAGTTTTTCTGA 2077878 >seq4 Length=49548238 Score = 150 bits (166), Expect = 2e-31 Identities = 226/320 (71%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 169846 GGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCA 169905 ||||| || | ||||| ||||| || ||||||||||| || |||| |||| || Sbjct 24272525 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCG 24272584 Query 169906 ATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAAC 169965 ||||| | ||||| || || ||||||||||| ||| || | ||||||||||| || || Sbjct 24272585 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 24272644 Query 169966 GGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGT 170025 || || |||||| | || || | | |||||| | | || | || || |||||| Sbjct 24272645 GGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 24272704 Query 170026 AGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCT 170085 |||||||||| | |||| | ||||||||||||||||| ||| |||||||| Sbjct 24272705 CATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCA 24272764 Query 170086 GCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTC 170145 ||||| || |||| || ||||| ||||| | | ||| | ||||| ||| ||| Sbjct 24272765 GCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTT 24272824 Query 170146 TCAGACGGAAT-GCCTCTAG 170164 || || | || |||| ||| Sbjct 24272825 TCTGATGCTATAGCCTTTAG 24272844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582788345507200