Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq2 223 4e-53 seq4 170 2e-37 >seq2 Length=61504503 Score = 223 bits (246), Expect = 4e-53 Identities = 335/471 (71%), Gaps = 9/471 (2%) Strand=Plus/Plus Query 84493 CATCAGAGAAAGAACCTTGCCCGAAAGGATA----CA--CAAGGAATACAGCAGATGCCG 84546 ||||||| ||| ||||| || | || ||| || |||| || ||||||| || | Sbjct 2077876 CATCAGAAAAACTTCCTTGACCAATAGAATAGGGTCAATCAAGAAA-ACAGCAGTAGCAG 2077934 Query 84547 CTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAA 84606 ||||||| ||||| || || |||||| ||||| ||||||||||| ||||| | || Sbjct 2077935 CTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAA 2077994 Query 84607 GTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTT 84666 ||||||| ||||||||||| ||| | | |||||| | |||||| | |||| || | Sbjct 2077995 GTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCT 2078054 Query 84667 GATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGA 84726 |||||| || ||||| |||| ||| || || | | ||| ||||||||||| || || | Sbjct 2078055 CATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAA 2078114 Query 84727 AATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGT 84786 | || | || || || ||| | |||| | ||||||||| || || |||||||| | Sbjct 2078115 AGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCAT 2078174 Query 84787 ACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAA 84846 | | | |||||||| || |||||||| ||||| |||||||| ||||| || ||| | | Sbjct 2078175 AAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGA 2078234 Query 84847 CGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCA 84905 ||| || || || || ||||| ||| || | | || || || ||||| | | || Sbjct 2078235 TGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCG 2078293 Query 84906 AACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 ||||| || | || | |||||| | ||| || | ||| | |||||| Sbjct 2078294 AACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAAG 2078344 >seq4 Length=49548238 Score = 170 bits (188), Expect = 2e-37 Identities = 223/309 (72%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 84493 CATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAA 84552 ||||||| ||| ||||| || | ||| | | | ||| ||||||| || ||||||| Sbjct 24272831 CATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAGCAGCTGCAA 24272772 Query 84553 CTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCC 84612 | ||||| || || |||||| ||||| ||||||||||| ||||| | |||||||| Sbjct 24272771 CAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCC 24272712 Query 84613 ATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAG 84672 | ||| ||||||| ||| | | |||||| | |||||| | |||| || | ||||| Sbjct 24272711 ACTCATGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAG 24272652 Query 84673 GTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTA 84732 | || ||||| |||| ||| || || | | ||| ||||||||||| || || || || | Sbjct 24272651 GGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCA 24272592 Query 84733 GACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGA 84792 || || || ||| | |||| | ||||||||| || || |||||||| || | | Sbjct 24272591 ATCCGATCGCTGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTA 24272532 Query 84793 GAGAACCAG 84801 |||||||| Sbjct 24272531 AAGAACCAG 24272523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571215130147040