Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4 111 2e-19 seq5 107 2e-18 seq1 105 8e-18 >seq4 Length=49548238 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 |||||||||||| | ||| | ||||||| || | || | |||||| || ||||| || Sbjct 46295706 ACCTCCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCC 46295765 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| || | ||||| |||||| ||| ||||| ||| |||| | ||||| || ||| Sbjct 46295766 ATTGGACGTTCCATTTGTTCCCCGAATGTAACTCCCAGTAGCACGGATATTGTGAACTGA 46295825 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| || || || || ||| ||| | |||||| || || ||||||||||| Sbjct 46295826 GACACCAATTCCTCCAGCTGATTTGCTTATCACAGCACATTCCTTCAGAGTATCATAAAT 46295885 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 ||| || || || |||||| |||| Sbjct 46295886 TCCCTCAATGCTGTCATCTTTCAT 46295909 >seq5 Length=59822759 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | || |||| || | || | |||||| || ||||| ||| Sbjct 16576287 CCACCTTGATCAACATAACGAGCGGTATCATTGAAGACACGTAACATAGGAACAATTCCA 16576228 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| ||| ||||| ||| |||| | ||||| |||||| Sbjct 16576227 TTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCACGAATATTGTGAATTGAG 16576168 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || | || || |||| ||| | |||||| || ||||||||||| ||| Sbjct 16576167 ACACCAATTCATCCAGCTTATTTACTTATGACAGCACATTCCTTCAGGGTATCATAGATT 16576108 Query 48540 CCTTCTATACTATCATCTATCATA 48563 || || || || |||||| ||||| Sbjct 16576107 CCCTCAATGCTGTCATCTTTCATA 16576084 >seq1 Length=61571842 Score = 105 bits (116), Expect = 8e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || |||| | || ||| || ||||| ||| Sbjct 60058551 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCCA 60058492 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| ||||| ||| ||||| ||| |||||| || || |||||| Sbjct 60058491 TTAGAAGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCGAATGTTGTGAATTGAT 60058432 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||| |||||| | || |||||||||||| Sbjct 60058431 ACACCAATTCCTCCAGCAGATTTGCTTATCGCAGCACATTCTGAGAGAGTATCATAAATT 60058372 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 60058371 CCCTCAATACTATCATCTTTCAT 60058349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562051268164320