Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-18 seq9 102 7e-16 seq211 89.7 4e-12 seq7 89.7 4e-12 seq4 89.7 4e-12 seq8 86.0 5e-11 >seq3 Length=64463019 Score = 111 bits (122), Expect = 1e-18 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | ||||| | || || |||||||| || ||||| |||||| | ||| | Sbjct 4437425 AAATTACAAAAGCAGTGGTCACAGTCCCAGCATACTTCAATGATTCACAAAGGACAGCAA 4437484 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| |||||||| || || | |||||||||||||| |||||||| |||| Sbjct 4437485 CAAAAGATGCTGGCCGTATTGCAGGGCTGGAAGTTCTTCGTATTATAAATGAACCAACTG 4437544 Query 550509 CTGCTGCACTTGCATATGG 550527 |||| || | || ||||| Sbjct 4437545 CTGCATCATTGGCCTATGG 4437563 Score = 91.5 bits (100), Expect = 1e-12 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || || || || || || || |||||||| ||| | || || ||||||||| Sbjct 19563618 GCAGTGATCACAGTTCCTGCTTACTTCAATGACTCGCAAAGGACTGCAACAAAAGATGCT 19563559 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| || | ||||| |||||||| ||||| ||||| || || | || Sbjct 19563558 GGCCGAATTGCTGGCCTGGAGGTTCTGCGTATTATAAATGAGCCTACGGCGGCATCGCTA 19563499 Query 550520 GCATATGGACTTGATAAA 550537 || ||||| |||| ||| Sbjct 19563498 GCTTATGGTTTTGAGAAA 19563481 Score = 87.8 bits (96), Expect = 1e-11 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 930663 ATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACC 930722 ||||||||||| ||||| || ||||| || ||||||||| |||||||||| | |||||| Sbjct 8511984 ATTGATTTTTCGTCACCTAACATTGCAAAGGAAATGCATGTTGGACATTTAAGGTCTACC 8512043 Query 930723 ATTATTGGAGA 930733 ||||||||||| Sbjct 8512044 ATTATTGGAGA 8512054 >seq9 Length=72259479 Score = 102 bits (112), Expect = 7e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| || || || || ||||| || || | || || |||||||||| Sbjct 1714288 ATGCTGTGGTCACTGTTCCTGCTTACTTCAATGATTCCCAGAGGCAGGCAACTAAAGATG 1714229 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || |||||| || || ||||| | ||||| ||||||||||| ||||||||||| Sbjct 1714228 CGGGTGTTATTGCCGGTCTCAATGTCATGCGTATCATCAATGAACCAGCTGCTGCTGCAA 1714169 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| ||||| || Sbjct 1714168 TTGCCTATGGTCTTGACAA 1714150 Score = 98.7 bits (108), Expect = 8e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || ||||| || || ||||| ||||| | || ||||| || || || |||||| Sbjct 12449376 GCAGTGATTACTGTTCCTGCTTATTTCAATGATGCTCAGCGTCAGGCCACAAAGGATGCT 12449435 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| ||| ||||| | || ||||||||||| || |||||||| || Sbjct 12449436 GGCCGCATTGCTGGCCTTGATGTTGAGAGGATCATCAATGAACCAACAGCTGCTGCTCTG 12449495 Query 550520 GCATATGGA 550528 | |||||| Sbjct 12449496 TCTTATGGA 12449504 Score = 89.7 bits (98), Expect = 4e-12 Identities = 416/651 (64%), Gaps = 12/651 (2%) Strand=Plus/Minus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTT 551846 ||| ||| |||| |||||||| || || ||||| || | |||| | || | ||| Sbjct 1714035 TGGTGATACTCACCTTGGTGGGGAGGACTTTGACAACCGCTTGGTCAACCAC--TTTGTC 1713978 Query 551847 GAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCTTCGTCGT 551906 |||| ||||| || ||| |||| ||| | || ||| ||| | | | Sbjct 1713977 CAAGAGTTTAAGCGGAAACACAAGAAGGATATCACTGGGAACCCCAGGGCTTTGAGAAGG 1713918 Query 551907 CTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATT 551966 || || ||| | || || || || || | | ||||| ||| | || || || ||| Sbjct 1713917 CTTAGGACTTCATGTGAGAGGGCTAAGAGGACACTTTCTTCTACAGCCCAGACTACGATT 1713858 Query 551967 GAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTT 552026 ||| | ||||| | | ||| || ||||||| || | | || | || |||| ||| Sbjct 1713857 GAAATTGATTCTCTCTATGAAGGCATTGATTTCTATTCCACCATCACCAGAGCCAGGTTT 1713798 Query 552027 GAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTT-TAAG 552085 || || || || || || ||||| || || || || || |||| | || Sbjct 1713797 GAGGAACTTAACATGGACCTATTCAGAAAGTGCATGGAGCCTGTGGAG-AAGTGCCTGAG 1713739 Query 552086 AGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAG 552145 ||| | ||||| ||||| || || ||||| |||| ||||||||||| || || || Sbjct 1713738 GGATACCAAGATAGATAAGAGCACTGTCCATGATGTTGTCCTTGTTGGTGGTTCGACTAG 1713679 Query 552146 AATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAA 552204 || || ||| ||| | || | || ||| || |||||| || || | || || Sbjct 1713678 GATCCCCAAAGTTCAGCAGCTGCTGCAGGACTTCTT-CAATGGAAAGGAACTT--TGCAA 1713622 Query 552205 GTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 | | | ||||| ||||| |||||||||||||| | || |||| || ||||| ||| Sbjct 1713621 GAGCATCAATCCTGATGAAGCTGTTGCCTATGGCACTGCTGTTCAGGCTGCTATCCTTAG 1713562 Query 552263 TGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCT 552322 ||| | |||| || | || | || | || | ||||| || || | ||||| Sbjct 1713561 TGGTGAGGGCAATGAGAAGGTGCAGGACCTTCTCCTCCTTGATGTGACCCCATTGTCTCT 1713502 Query 552323 TGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382 |||| | ||||| | |||||| | ||||| ||||| || || || || ||||| Sbjct 1713501 TGGTCTTGAAACTGCTGGAGGAGTCATGACCGTCCTTATTCCAAGGAACACCACCATTCC 1713442 Query 552383 TTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGT 552433 || || | || || ||||| || || ||||| || ||| ||| Sbjct 1713441 AACGAAGAAGGAGCAGGTCTTCTCTACCTACTCTGATAACCAGCCTGGTGT 1713391 >seq211 Length=21435 Score = 89.7 bits (98), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| ||||| || | ||||| ||| || || |||||||| ||||| | ||| | Sbjct 1274 GAGGCGGAGGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGCCAAAGTACG 1215 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||| ||||| || ||||||||||| || || || ||||| ||||| || ||||| || Sbjct 1214 GCCATCCTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGTGGGATTCCCTC 1155 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGT 563435 ||| || ||||| ||| || || ||||| || |||| | | || ||||| Sbjct 1154 TTTGTCCTGAATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCAAGAGT 1095 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || ||||| || || || || || || ||||| Sbjct 1094 TATGGTCTTCCCAGTGAGGGTCTTCACAAATATCTGCAT 1056 >seq7 Length=46770411 Score = 89.7 bits (98), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| ||||| || | ||||| ||| || || |||||||| ||||| | ||| | Sbjct 21031297 GAGGCGGAGGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGCCAAAGTACG 21031356 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||| ||||| || ||||||||||| || || || ||||| ||||| || ||||| || Sbjct 21031357 GCCATCCTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGTGGGATTCCCTC 21031416 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGT 563435 ||| || ||||| ||| || || ||||| || |||| | | || ||||| Sbjct 21031417 TTTGTCCTGAATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCAAGAGT 21031476 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || ||||| || || || || || || ||||| Sbjct 21031477 TATGGTCTTCCCAGTGAGGGTCTTCACAAATATCTGCAT 21031515 >seq4 Length=49548238 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | ||||| | || || ||| |||| || || || |||||| | | | | Sbjct 974504 AAATTACAAAAGCAGTGGTCACAGTCCCAACATACTTCAACGATTCACAAAGGACAACAA 974445 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||| ||||||| |||||||| || || | |||||||||||||| |||||||| |||| Sbjct 974444 CAAAATATGCTGGCCGTATTGCAGGGCTGGAAGTTCTTCGTATTATAAATGAACCAACTG 974385 Query 550509 CTGCTGCACTTGCATAT 550525 |||| || | || ||| Sbjct 974384 CTGCATCATTGGCCTAT 974368 >seq8 Length=47074253 Score = 86.0 bits (94), Expect = 5e-11 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 390803 CAGTATTAATACCATTATCACCATATACACATTGAATTA-ATTTGTCATTGGCATTTCTT 390861 ||| || || |||| || ||||||| | ||||| | || | || || ||||||| Sbjct 37745220 CAGCATCCATGCCATCTTCCCCATATAGGAACTGAATGACATCTCCCAA-GGAATTTCTT 37745278 Query 390862 ACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTTTGGATA 390921 |||||||||||||| | || | |||||||| | ||| || | | | ||||||| Sbjct 37745279 ACGGTACCATCATATTTCACCATGATGTCTTCCATGGCTTTCACAAGCCTGCGTTGGATA 37745338 Query 390922 TAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCCATAACT 390981 || ||||| || | ||| || | || |||| ||| | |||||| || || | ||| | Sbjct 37745339 TACCCAGTCTCAGAAGTCTTCACGGCCGTATCAATCAGACCTTCCCTACCACCTATAGCA 37745398 Query 390982 TGGAAGAAAAATTC 390995 || ||||||||||| Sbjct 37745399 TGAAAGAAAAATTC 37745412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028862981632120