Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq2 205 3e-48 seq4 127 6e-25 seq8 95.1 4e-15 >seq2 Length=61504503 Score = 205 bits (226), Expect = 3e-48 Identities = 323/460 (70%), Gaps = 7/460 (2%) Strand=Plus/Minus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || || || |||||||| || | ||||||||||| || | ||||| || Sbjct 2078334 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 2078275 Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | || ||| | ||| ||||| | || |||||||| || || || ||||| Sbjct 2078274 ACCTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGA 2078216 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 ||| ||||| || |||||||| ||||| || || ||| | || ||||||||||| || || Sbjct 2078215 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTC 2078156 Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049 || || | | || | ||| || |||||| | || |||||||| || |||||||| Sbjct 2078155 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 2078096 Query 26050 TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTT 26109 || | | || |||||| ||||||||||||| || ||| | || ||| | | ||||| Sbjct 2078095 TGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTT 2078036 Query 26110 CTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAAT 26169 |||| | || ||||| ||| || | |||||||||| || | | || || || Sbjct 2078035 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 2077976 Query 26170 GAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTT 26229 | | || ||||| |||||||||| |||| || | | || ||| || || ||||| Sbjct 2077975 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 2077916 Query 26230 AGTT-----TATCCTTTCGGACAAGGGAGTTTTAGTGATG 26264 || ||| || | || ||||| |||||| ||||| Sbjct 2077915 GATTGACCCTATTCTATTGGTCAAGGAAGTTTTTCTGATG 2077876 >seq4 Length=49548238 Score = 127 bits (140), Expect = 6e-25 Identities = 214/310 (69%), Gaps = 0/310 (0%) Strand=Plus/Plus Query 25955 TCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAAC 26014 || || || ||| | || ||||||||||| || || || || | | || | ||| Sbjct 24272522 TCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCA 24272581 Query 26015 GCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATAC 26074 || |||||| | || |||||||| || |||||||||| | | || |||||| ||||| Sbjct 24272582 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 24272641 Query 26075 AATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCA 26134 |||||||| || ||| | || ||| | | ||||||||| | || ||||| ||| Sbjct 24272642 AATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 24272701 Query 26135 GGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATAT 26194 || |||||||||| || | | || || ||| | || ||||| |||||||||| Sbjct 24272702 GGTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 24272761 Query 26195 ACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGT 26254 |||| || | | || ||| || || ||||| || | ||| | || ||||| ||| Sbjct 24272762 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGT 24272821 Query 26255 TTTAGTGATG 26264 ||| ||||| Sbjct 24272822 TTTTCTGATG 24272831 >seq8 Length=47074253 Score = 95.1 bits (104), Expect = 4e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | | || || || |||||||| || | |||||||| || || | Sbjct 5860715 TTCTGTAACTGGATAAGTAGCACCGAAAACCGTCTTTACATCGGATGGTTAGGTGTTTTG 5860656 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCG 25921 ||||| || |||| | | || ||| | ||||| | ||||||||||| || || Sbjct 5860655 ATGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCT 5860596 Query 25922 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 25981 || |||||||| ||||| || |||||||| |||| || || ||| | || ||||| ||| Sbjct 5860595 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTACTTTATGGAAATAAT 5860536 Query 25982 AT 25983 || Sbjct 5860535 AT 5860534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146712133425312