Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq2 242 1e-59 seq4 181 3e-41 seq8 98.7 3e-16 >seq2 Length=61504503 Score = 242 bits (268), Expect = 1e-59 Identities = 332/464 (72%), Gaps = 5/464 (1%) Strand=Plus/Plus Query 36490 TACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACT-----AAGAATACAGCAAATGC 36544 || ||||||| ||||| ||||| |||| || ||| | ||||| |||||| || Sbjct 2077873 TAGCATCAGAAAAACTTCCTTGACCAATAGAATAGGGTCAATCAAGAAAACAGCAGTAGC 2077932 Query 36545 TGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACT 36604 ||||||||||| |||||||| || ||| ||||| || | |||||| || | |||| Sbjct 2077933 AGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACT 2077992 Query 36605 AAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAG 36664 ||||||||| | || |||| ||| | | ||||| | ||||| | ||||| || Sbjct 2077993 AAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAG 2078052 Query 36665 TTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTA 36724 | ||| || || || || ||||||||||| || | | |||||||||||| |||||||| Sbjct 2078053 CTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTA 2078112 Query 36725 GAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCC 36784 ||||| | ||||| || || | || | || || |||||||| || |||||||| Sbjct 2078113 AAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCC 2078172 Query 36785 ATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGC 36844 ||| ||||| | || || |||||||||||||||||||| ||||| || ||||| ||||| Sbjct 2078173 ATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGC 2078232 Query 36845 AACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCC 36904 | || || || | |||| | | ||| || || | | ||||||||| | || || Sbjct 2078233 GATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACC 2078292 Query 36905 AAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGT 36948 ||||| || | || || ||||| | || || || | ||||| Sbjct 2078293 GAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGT 2078336 >seq4 Length=49548238 Score = 181 bits (200), Expect = 3e-41 Identities = 227/310 (73%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 36485 AGGC-ATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATG 36543 |||| ||| ||||||| ||||| ||||| |||| ||||| | ||||| |||||| | Sbjct 24272840 AGGCTATAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAG 24272781 Query 36544 CTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAAC 36603 | ||||||||||| |||||||| || ||| ||||| || | |||||| || | ||| Sbjct 24272780 CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAAC 24272721 Query 36604 TAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGA 36663 |||||||||| | | |||| ||| | | ||||| | ||||| | ||||| | Sbjct 24272720 TAAGTTCCCACTCATGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTA 24272661 Query 36664 GTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGT 36723 | | ||| || || || || ||||||||||| || | | |||||||||||| ||||||| Sbjct 24272660 GCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGT 24272601 Query 36724 AGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTC 36783 | ||||| | ||||| || || | || | || || |||||||| || ||||||| Sbjct 24272600 AAAAGTGCAATCCGATCGCTGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTC 24272541 Query 36784 CATAGAGTAA 36793 |||| ||||| Sbjct 24272540 CATAAAGTAA 24272531 >seq8 Length=47074253 Score = 98.7 bits (108), Expect = 3e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 36759 ATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATA 36818 || || ||||||| || || |||||||| ||||| | || | ||||||||||||||| Sbjct 5860519 ATAGCACCAGAGACAATATTATTTCCATAAAGTAAAGAACCAAAAACAGGCTCACGAATA 5860578 Query 36819 CCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTT 36878 ||||| ||||| || ||||| ||||| | || || || | |||| | | ||| || Sbjct 5860579 CCATCAATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAATACGGAAGTTGCGGTC 5860638 Query 36879 AAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTT 36938 || | | ||||||||| | || || ||||| || | || || ||||| | || || Sbjct 5860639 AATAAGGTAGGGATCATCAAAACACCTAACCATCCGATGTAAAGACGGTTTTCGGTGCTA 5860698 Query 36939 GTAACCCAGTCACATAA 36955 | | ||||| ||| || Sbjct 5860699 CTTATCCAGTTACAGAA 5860715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150439770942552