Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq2 208 2e-49 seq4 129 2e-25 >seq2 Length=61504503 Score = 208 bits (230), Expect = 2e-49 Identities = 332/472 (70%), Gaps = 7/472 (1%) Strand=Plus/Plus Query 5712 TACCATCACTGAAACTTCCCTGTCC----GAA-AGGGTATACTAAAAATACTG-AGTAGG 5765 || ||||| |||||||| || || ||| ||||| | || || || | ||||| Sbjct 2077873 TAGCATCAGAAAAACTTCCTTGACCAATAGAATAGGGTCAATCAAGAAAACAGCAGTAG- 2077931 Query 5766 CTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAAC 5825 | || ||||| || ||||||||||| || |||||| || ||||| || | | | ||| Sbjct 2077932 CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAAC 2077991 Query 5826 TAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGA 5885 |||||||||| | || |||| ||| || | ||||| | |||||| | || | | Sbjct 2077992 TAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTA 2078051 Query 5886 GTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGAT 5945 | | || || || |||||||| | ||| ||||| | | || |||||||| || || | Sbjct 2078052 GCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGT 2078111 Query 5946 AGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTC 6005 | ||||| || || || || || | || | || ||| || || || || ||||||| Sbjct 2078112 AAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTC 2078171 Query 6006 CATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAG 6065 |||| |||| ||| || | || || ||||| || || || || || ||||| || |||| Sbjct 2078172 CATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAG 2078231 Query 6066 CTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACAC 6125 | | ||| || | |||||| ||| ||||||||| || | | || ||||| || |||| Sbjct 2078232 CGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACAC 2078291 Query 6126 CAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 | ||||| || | || || ||||| | ||||||||| | ||||| ||||| Sbjct 2078292 CGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 2078343 >seq4 Length=49548238 Score = 129 bits (142), Expect = 2e-25 Identities = 221/317 (70%), Gaps = 3/317 (1%) Strand=Plus/Minus Query 5707 AGGC-ATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAG 5764 |||| ||| ||||| |||||||| || || | ||||| | || || || | ||||| Sbjct 24272840 AGGCTATAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAG 24272781 Query 5765 GCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAA 5824 | || ||||| || ||||||||||| || |||||| || ||||| || | | | || Sbjct 24272780 -CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 24272722 Query 5825 CTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACG 5884 ||||||||||| | | |||| ||| || | ||||| | |||||| | || | Sbjct 24272721 CTAAGTTCCCACTCATGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 24272662 Query 5885 AGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGA 5944 || | || || || |||||||| | ||| ||||| | | || |||||||| || || Sbjct 24272661 AGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGG 24272602 Query 5945 TAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTT 6004 || ||||| || || || || || | || | || ||| || || || || |||||| Sbjct 24272601 TAAAAGTGCAATCCGATCGCTGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTT 24272542 Query 6005 CCATAGAGTAGAGATCC 6021 ||||| |||| ||| || Sbjct 24272541 CCATAAAGTAAAGAACC 24272525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152634757497768