Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq2 224 3e-54 seq4 163 9e-36 seq8 95.1 4e-15 >seq2 Length=61504503 Score = 224 bits (248), Expect = 3e-54 Identities = 328/464 (71%), Gaps = 5/464 (1%) Strand=Plus/Plus Query 25970 TACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACT-----AAGAATACAGCAAATGC 26024 || ||||||| ||||| ||||| |||| || ||| | ||||| |||||| || Sbjct 2077873 TAGCATCAGAAAAACTTCCTTGACCAATAGAATAGGGTCAATCAAGAAAACAGCAGTAGC 2077932 Query 26025 TGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACT 26084 ||||||||||| |||||||| || ||| ||||| || | ||| || || | |||| Sbjct 2077933 AGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACT 2077992 Query 26085 AAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAG 26144 ||||||||| | || |||| ||| | | || | | ||||| | ||||| || Sbjct 2077993 AAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAG 2078052 Query 26145 TTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTA 26204 | ||| || || || || || |||||||| || | | |||||||||||| |||||||| Sbjct 2078053 CTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTA 2078112 Query 26205 GAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCC 26264 ||||| | ||||| || ||| | || | || || || ||||| || |||||||| Sbjct 2078113 AAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCC 2078172 Query 26265 ATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGC 26324 ||| ||||| | || || |||||||||||||||||||| ||||| || ||||| ||||| Sbjct 2078173 ATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGC 2078232 Query 26325 AACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCC 26384 | || || || | |||| | | ||| || || | | ||||||||| | || || Sbjct 2078233 GATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACC 2078292 Query 26385 AAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGT 26428 ||||| || | || || ||||| | || || || | ||||| Sbjct 2078293 GAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGT 2078336 >seq4 Length=49548238 Score = 163 bits (180), Expect = 9e-36 Identities = 223/310 (72%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 25965 AGGC-ATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATG 26023 |||| ||| ||||||| ||||| ||||| |||| ||||| | ||||| |||||| | Sbjct 24272840 AGGCTATAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAG 24272781 Query 26024 CTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAAC 26083 | ||||||||||| |||||||| || ||| ||||| || | ||| || || | ||| Sbjct 24272780 CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAAC 24272721 Query 26084 TAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAA 26143 |||||||||| | | |||| ||| | | || | | ||||| | ||||| | Sbjct 24272720 TAAGTTCCCACTCATGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTA 24272661 Query 26144 GTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGT 26203 | | ||| || || || || || |||||||| || | | |||||||||||| ||||||| Sbjct 24272660 GCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGT 24272601 Query 26204 AGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTC 26263 | ||||| | ||||| || ||| | || | || || || ||||| || ||||||| Sbjct 24272600 AAAAGTGCAATCCGATCGCTGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTC 24272541 Query 26264 CATAGAGTAA 26273 |||| ||||| Sbjct 24272540 CATAAAGTAA 24272531 >seq8 Length=47074253 Score = 95.1 bits (104), Expect = 4e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26239 ATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATA 26298 || || || |||| || || |||||||| ||||| | || | ||||||||||||||| Sbjct 5860519 ATAGCACCAGAGACAATATTATTTCCATAAAGTAAAGAACCAAAAACAGGCTCACGAATA 5860578 Query 26299 CCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTT 26358 ||||| ||||| || ||||| ||||| | || || || | |||| | | ||| || Sbjct 5860579 CCATCAATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAATACGGAAGTTGCGGTC 5860638 Query 26359 AAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTT 26418 || | | ||||||||| | || || ||||| || | || || ||||| | || || Sbjct 5860639 AATAAGGTAGGGATCATCAAAACACCTAACCATCCGATGTAAAGACGGTTTTCGGTGCTA 5860698 Query 26419 GTAACCCAGTCACATAA 26435 | | ||||| ||| || Sbjct 5860699 CTTATCCAGTTACAGAA 5860715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151978821282288