Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq211 107 2e-18 seq7 107 2e-18 seq4 91.5 1e-13 >seq211 Length=21435 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | || | || || ||||| ||||| || || || |||||||| || || Sbjct 1282 CCTCCTCGGAGGCGGAGGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGCC 1223 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| || | ||||| || ||||| || | | ||| || || || || Sbjct 1222 AAAGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGTGGG 1163 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || ||||| || ||||| ||| || ||| | || | |||||||| | || || Sbjct 1162 ATTCCCTCTTTGTCCTGAATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACC 1103 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | || || || || | || || |||||||||||||| Sbjct 1102 TCAAGAGTTATGGTCTTCCCAGTGAGGGTCTTCACAAATATCTGCAT 1056 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | || | || || ||||| ||||| ||||| || ||||||||||| || Sbjct 1510 CCTCCTCGGAGGCGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAATCAGCT 1451 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| ||||| || ||||| || | ||||| || || || || Sbjct 1450 AATGTCCGCCCATCCTCCAGCTGCTTTCCAGCAAAGATGATTCGCTGCTGGTCCGGTGGG 1391 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || || ||| || ||| | || | |||||||| | || || Sbjct 1390 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAGCTCTCGACC 1331 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || || || || | || || ||||| |||||||| Sbjct 1330 TCGAGCGTGATAGTCTTCCCAGTAAGTGTCTTCACAAAGATCTGCAT 1284 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || || | ||| | || | || ||||| || || || || || || || || | Sbjct 1056 TTCCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAG 997 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | || | |||| || | ||||| || ||||| || | | ||| || || || | Sbjct 996 CAAGCGTACGACCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGG 937 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | ||||| || ||||| ||||| || || ||| | || | ||||| || | |||| Sbjct 936 GGATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCCA 877 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | || || |||| || || || || | || || ||||||||||||||| Sbjct 876 CCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTCACAAATATCTGCATG 827 >seq7 Length=46770411 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | || | || || ||||| ||||| || || || |||||||| || || Sbjct 21031289 CCTCCTCGGAGGCGGAGGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGCC 21031348 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| || | ||||| || ||||| || | | ||| || || || || Sbjct 21031349 AAAGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGTGGG 21031408 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || ||||| || ||||| ||| || ||| | || | |||||||| | || || Sbjct 21031409 ATTCCCTCTTTGTCCTGAATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACC 21031468 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | || || || || | || || |||||||||||||| Sbjct 21031469 TCAAGAGTTATGGTCTTCCCAGTGAGGGTCTTCACAAATATCTGCAT 21031515 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | || | || || ||||| ||||| ||||| || ||||||||||| || Sbjct 21031061 CCTCCTCGGAGGCGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAATCAGCT 21031120 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| ||||| || ||||| || | ||||| || || || || Sbjct 21031121 AATGTCCGCCCATCCTCCAGCTGCTTTCCAGCAAAGATGATTCGCTGCTGGTCCGGTGGG 21031180 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || || ||| || ||| | || | |||||||| | || || Sbjct 21031181 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAGCTCTCGACC 21031240 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || || || || | || || ||||| |||||||| Sbjct 21031241 TCGAGCGTGATAGTCTTCCCAGTAAGTGTCTTCACAAAGATCTGCAT 21031287 >seq4 Length=49548238 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || |||| || | | |||| || | ||| Sbjct 2204842 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCGAGGGTGCGGCCATCCTCGAGCTGC 2204783 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | ||| || || || ||||||||||| || || || || || Sbjct 2204782 TTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTA 2204723 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | || || || || |||| || |||||||| Sbjct 2204722 GCCTTGACGTTGTCAATTGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTG 2204663 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || |||||||||||||| Sbjct 2204662 AGGGTCTTAACAAATATCTGCAT 2204640 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||||||| || || || || || || |||||||| || | ||||| |||| ||| Sbjct 4633285 ACCAAATGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGCTAATGTTCTCCCATCTTCC 4633344 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||||||||| ||||| |||| | || || || || |||||||| || || || ||| Sbjct 4633345 AATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 4633404 Query 101381 A 101381 | Sbjct 4633405 A 4633405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396238854883116