Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq2 212 7e-50 seq4 140 4e-28 seq8 93.3 5e-14 seq6 82.4 8e-11 >seq2 Length=61504503 Score = 212 bits (234), Expect = 7e-50 Identities = 307/432 (71%), Gaps = 11/432 (3%) Strand=Plus/Minus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||| ||||||||||| |||||||||||| ||| | | ||| | || || || | Sbjct 2078303 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTA 2078244 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || ||||| || || |||||||| ||||| |||||||| | || |||||| | |||| Sbjct 2078243 TCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTT 2078184 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 | | || ||||| ||||| || ||||||||||| | |||||| ||| || || | Sbjct 2078183 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCG 2078124 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 | | ||||| || || || |||||||| ||| || ||||||||||||| || ||||| | Sbjct 2078123 GATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCG 2078064 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTC 162835 | |||| | || | || | |||||| | | || | ||| | | | |||| Sbjct 2078063 GCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTC 2078007 Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895 || ||||||||||| || ||| | ||||||||||||||||| ||||||||| || | Sbjct 2078006 GTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAG 2077947 Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGT-----CTATCCTTTCGGTCAAGGTTC 162950 | || || | || || ||||| |||||| | |||| || | |||||||| Sbjct 2077946 CTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTCTATTGGTCAAGGAAG 2077887 Query 162951 TTTCTCTGACGC 162962 ||| ||||| || Sbjct 2077886 TTTTTCTGATGC 2077875 >seq4 Length=49548238 Score = 140 bits (154), Expect = 4e-28 Identities = 224/319 (70%), Gaps = 7/319 (2%) Strand=Plus/Plus Query 162655 GGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCT 162714 ||||| | || ||||| ||||| || ||||||||||| | |||||| ||| || Sbjct 24272525 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCG 24272584 Query 162715 ATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAAT 162774 || || | ||||| || || || |||||||| ||| || ||||||||||||| || ||| Sbjct 24272585 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 24272644 Query 162775 GGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT--- 162831 || || |||| | || | || | |||||| | | || | ||| | | | Sbjct 24272645 GGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATG 24272701 Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891 |||| | ||||||||||| || ||| | ||||||||||||||||| ||||||||| Sbjct 24272702 GGTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 24272761 Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951 || || || || | || || ||||| |||||| | | ||| | |||||||| | Sbjct 24272762 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGT 24272821 Query 162952 TTCTCTGACGCAAT-GCCT 162969 || ||||| || || |||| Sbjct 24272822 TTTTCTGATGCTATAGCCT 24272840 >seq8 Length=47074253 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/158 (73%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCA 162595 |||| ||||| ||||| |||||||||||| ||| | | ||| |||| | || | Sbjct 5860675 TCGGATGGTTAGGTGTTTTGATGATCCCTACCTTATTGACCGCA---ACTTCCGTATTTA 5860619 Query 162596 TCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAG 162655 | || || ||||| || || |||||||| ||||| |||||||| | || |||||| | Sbjct 5860618 TTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTG 5860559 Query 162656 GTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCT 162693 |||| | || ||||| || || || ||||||||||| Sbjct 5860558 GTTCTTTACTTTATGGAAATAATATTGTCTCTGGTGCT 5860521 >seq6 Length=48101398 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 163179 AGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGC 163238 || |||||| |||||||| |||||||| || || |||||||| || |||||||| ||||| Sbjct 8140971 AGGGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAATATGC 8141030 Query 163239 ATCTTTCAACAACTCACG 163256 |||||||||||| || Sbjct 8141031 TAGTTTCAACAACTCTCG 8141048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553028191770720