Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4 286 6e-72 seq7 255 1e-62 >seq4 Length=49548238 Score = 286 bits (316), Expect = 6e-72 Identities = 587/862 (68%), Gaps = 23/862 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| || ||||||| ||| Sbjct 42841970 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTC 42842029 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||||||||||| | ||| |||| | | || || || | | ||| Sbjct 42842030 CATCCAGTCGAAGGGGTTGGCGGCGTTGTACATCTTCCTG-CAC-CCGAGCGCCATGAGC 42842087 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | |||||||| | ||||||||| | ||| Sbjct 42842088 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGGCGCCGTTCATGCCGACGAGC 42842147 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| | || | || ||||| ||| || | ||||| || | || ||| Sbjct 42842148 GCGACGGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATC 42842207 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||||||| ||| | | ||| |||| ||| | | | ||||| | |||||| Sbjct 42842208 TCGCGGACGCGGGCCTCGTCGAGCTTGCTGCGGAGGAGGTCG---TAGAGGAGGCAGGCG 42842264 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || ||| Sbjct 42842265 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 42842324 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||||||||||| || || ||| ||||| ||||||||||||||| Sbjct 42842325 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 42842384 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCCA 48315 || || ||||| ||| ||| | ||| | |||||| || | | |||||| Sbjct 42842385 TCAACGCAGGCGAAGGCGACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCA 42842440 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA- 48374 | | |||||||| ||||| || | |||| || || ||||| ||||||| Sbjct 42842441 GCGCATGGCCCAGTCGGCCTTGCGGCGGACGGCGGGCACGGTGTCGATGGCGCGGAAGAG 42842500 Query 48375 --GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 | | ||| ||| | |||| | ||||| ||||||| | ||||||||| Sbjct 42842501 GCGGTCCTT---CTCGGCGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTC 42842557 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || ||||||||||| ||||||||||||| ||||| ||||| Sbjct 42842558 CGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCGCGCCTCGGCGACCTG 42842617 Query 48493 CACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 ||| || | ||| | | ||| || ||||| || || || || || || || | Sbjct 42842618 CACGTCGGACATGAAGCGC-GAAGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGA 42842676 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAG---CATTCCAGC 48608 ||||||| || || || | ||| |||||||||| | ||| || | | | |||| Sbjct 42842677 AGAAGGCGAGCACGTGGGAGACGAAGTGGCGCTCGTCGGGGGACAGCGCCTCGTCCCAGT 42842736 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 | | |||| | |||||||| || || | |||||||||||||| | || || | Sbjct 42842737 GCCGCGCGTCGGCGGAGAGGTCCACCTCCTCGGCCGTCCAGAAGGACGCCACCGCCTTCT 42842796 Query 48669 TGTACATGCCCCATATGTCCGG 48690 |||| | |||| || | ||| Sbjct 42842797 TGTAGAACTCCCAGATCTGCGG 42842818 >seq7 Length=46770411 Score = 255 bits (282), Expect = 1e-62 Identities = 584/870 (67%), Gaps = 33/870 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| ||||| || | ||||| |||||||| ||||| |||| || ||||||| ||| Sbjct 35944341 CTGGTACTCCCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTC 35944400 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||||||||||| |||||||| | | ||| |||||| | ||| Sbjct 35944401 CATCCAGTCGAAGGGGTTGGCGACGTTATACATCTTCTTGT--GGCCCAGCGCCATGAGC 35944458 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | ||||||| | |||||| || | ||| Sbjct 35944459 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGCCGCCGTTCATTCCGACGAGC 35944518 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| | || | || ||||| ||| || | ||||| || | || ||| Sbjct 35944519 GCGACGGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATC 35944578 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | |||||| ||| | | ||| ||| ||| | | | ||||| | |||||| Sbjct 35944579 TCGCGGACGCGGCCCTCGTCGAGCTTGCCGCGGAGGAGATCG---TAGAGGAGGCAGGCG 35944635 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | ||| ||||| ||| ||||||| ||||||||||| |||||| ||| Sbjct 35944636 AAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCCGGC 35944695 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||||||||||| || || ||| ||||| ||||||||||||||| Sbjct 35944696 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 35944755 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCCA 48315 || || ||||| ||| ||| | ||| | |||||| | | | | |||||| Sbjct 35944756 TCGACGCAGGCGAAGGCGACGAGGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCA 35944811 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371 | | |||||||| ||||| | ||| ||| | || || ||||| |||| Sbjct 35944812 GCGCATGGCCCAGTCGGCCTT----GCGGCGCACGGCGGGGACGGTGTCGATGGCGCGGA 35944867 Query 48372 AGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 ||| | | ||| ||| | |||| | ||||| |||||| | ||||| Sbjct 35944868 AGAGGCGGTCCTT---CTCGGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACA 35944924 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||||| ||||||||||| | ||||| | Sbjct 35944925 TCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCCGCGA 35944984 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||||||| || | ||| | || ||||| || || || || || || | Sbjct 35944985 CCTGCACGTCGGACATGAAGCGGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGG 35945044 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605 | |||||||| || || || | ||| |||||||||| | ||| ||| || | || Sbjct 35945045 CGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGGGAGAGCGCCGCGTCCC 35945104 Query 48606 AGCCCTGTACGTCTTTGCC--CAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGC 48663 || | |||| ||| |||||||| || || | |||||||||||||| | || Sbjct 35945105 AGTGGCGCGCGTC--GGCCGAGAGGTCCACCTCCTCGGCCGTCCAGAAGGACGCCACCGC 35945162 Query 48664 TTTTTTGTACATGCCCCATATGTCCGGATA 48693 || ||||| | |||| || | ||| || Sbjct 35945163 CTTCTTGTAGAACTCCCAGATCTGCGGGTA 35945192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931437457617920