Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4 185 2e-41 seq7 179 7e-40 >seq4 Length=49548238 Score = 185 bits (204), Expect = 2e-41 Identities = 564/860 (66%), Gaps = 33/860 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||| ||||| ||| | || || Sbjct 42842812 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTGGACCTC 42842753 Query 25537 GCCAAGGACATGGACGGC--TGGTACG---CTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 || ||| | |||| ||| ||| | || ||| ||||||| || || || Sbjct 42842752 TCCGCCGACGCG--CGGCACTGGGACGAGGCGCTGTCCCCCGACGAGCGCCACTTCGTCT 42842695 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 ||||| | || ||||| || ||||| || || || ||| |||||| || | Sbjct 42842694 CCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCTTCGC 42842635 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| || |||||| || ||||| | |||||||| |||||||| |||| Sbjct 42842634 GCTTCATGTCCGACGTGCAGGTCGCCGAGGCGCGGGCCTTCTACGGCTTCCAGATCGCCA 42842575 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCG 25771 |||| || | ||||| ||| |||| | ||| || ||| ||||| |||| || Sbjct 42842574 TCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCG 42842515 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 |||||| || || || || | |||||||| | | ||| | || | ||||| Sbjct 42842514 CCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTGCCCGCCGTCCGCCGCAAGGCCG 42842455 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 ||||||||| |||||| || || ||||||| || |||||| || || ||| Sbjct 42842454 ACTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGCCTCGTCGCC 42842399 Query 25891 TTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCA 25948 || || ||| || ||||||||||| ||| || || || |||| ||||||||||||||| Sbjct 42842398 TTCGCCTGC-GTTGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCA 42842341 Query 25949 AGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || || || |||||| || || ||| ||||||||||||||| | | ||||||| Sbjct 42842340 AGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGG 42842281 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTC 26068 | || ||| | || || |||||||| |||||| | || | | | | ||| | || Sbjct 42842280 GCCTGCACTGCGACTTCGCCTGCCTCCTCTAC---GACCTCCTCCGCAGCAAGC--TC-G 42842227 Query 26069 AAGAGAC---CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125 | ||| | |||| | ||| || || || || || |||||| ||||| Sbjct 42842226 ACGAGGCCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGTCT 42842167 Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185 | ||||||||| | ||||||||||| ||||| | Sbjct 42842166 GCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGCCCTCATGAGCCAGTACATCG 42842107 Query 26186 AGTATGTGGCCGACCATCTGCT-GTGCCAGCT-GGGACTCGCCAGACTCTACAGTACGC- 26242 ||| || ||||||| ||||| || | ||| ||| | ||| | |||| |||| Sbjct 42842106 AGTTCGTCGCCGACCGCCTGCTCATGGC-GCTCGGGTGCAGGAAGA-TGTACA--ACGCC 42842051 Query 26243 -CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301 | ||||| ||||||| ||||| ||| ||| || | || |||||||||||||| || Sbjct 42842050 GCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAG 42841991 Query 26302 AAGAGGGTCGGCGACTATCA 26321 ||| | ||||||||||| || Sbjct 42841990 AAGCGCGTCGGCGACTACCA 42841971 >seq7 Length=46770411 Score = 179 bits (198), Expect = 7e-40 Identities = 389/573 (68%), Gaps = 18/573 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCT- 25535 || |||||| | ||||||||||| || |||||| ||||| ||| | || || Sbjct 35945183 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTGGACCTC 35945124 Query 25536 --GGCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTTCTC 25590 |||| ||| | | |||| |||| || ||| ||||||| || || || Sbjct 35945123 TCGGCC---GACGCGCGCCACTGGGACGCGGCGCTCTCCCCCGACGAGCGCCACTTCATC 35945067 Query 25591 AAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 ||||| | || ||||| || ||||| || || || ||| |||||| || | Sbjct 35945066 TCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCC 35945007 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | |||| || |||||| || |||||| |||||||| |||||||| ||| Sbjct 35945006 CGCTTCATGTCCGACGTGCAGGTCGCGGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCC 35944947 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTC 25770 ||||| || | ||||| ||| |||| | ||| ||| ||| ||||| |||| | Sbjct 35944946 ATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGGC 35944887 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 ||||||| || || || || | |||||||| | | ||| | | | ||||| Sbjct 35944886 GCCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCC 35944827 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||||||| |||||| || || | |||||| || |||||| || || || Sbjct 35944826 GACTGGGCCATGCGCTGGATCGACGGCGGGGAGCGCTTCGC----CGAGCGCCTCGTCGC 35944771 Query 25890 CTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947 ||| || ||| || ||||||||||| ||| || || || |||| |||||||||||||| Sbjct 35944770 CTTCGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTC 35944713 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || || |||||| || || ||| ||||||||||||||| | | |||||| Sbjct 35944712 AAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAG 35944653 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 || |||||| | || || |||||||| |||||| Sbjct 35944652 GGCCTCCACTGCGACTTCGCCTGCCTCCTCTAC 35944620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928749732734720