Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq2 262 4e-65 seq4 214 2e-50 >seq2 Length=61504503 Score = 262 bits (290), Expect = 4e-65 Identities = 320/432 (74%), Gaps = 7/432 (2%) Strand=Plus/Minus Query 8288 TCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATT 8346 |||| ||||| || ||| | |||||||| ||| || ||| |||| || | || ||| Sbjct 2078303 TCGGATGGTTCGGTGTTTTGATGATCCCTACC-TTATTGACCGCAACTTCTGTATTTATT 2078245 Query 8347 ACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGA 8406 | ||| ||| | ||||| ||||| || || || || || || || || || ||| |||| Sbjct 2078244 ATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGT 2078185 Query 8407 TCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATT 8466 ||| | | || || ||||| || ||||||||||| || |||| | ||| || || Sbjct 2078184 TCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATC 2078125 Query 8467 GGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGT 8526 || | ||||| ||||| || |||||||| || ||| ||||||||||| | ||||| || Sbjct 2078124 GGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGC 2078065 Query 8527 GGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGT 8586 || ||||| |||| | ||| | |||||| | ||||| || | ||||||||||||| Sbjct 2078064 GGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGT 2078005 Query 8587 GAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCT 8646 || ||||||||| || ||| || || |||||||||||||| ||||||||| || ||| Sbjct 2078004 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 2077945 Query 8647 CCTGTTGCCGCTGCTTCTGCTGTATTC---CTTG--TCTATCCTTTTGGTCAAGGTTCGT 8701 |||||||| |||||| ||||||| ||| ||| |||| || |||||||||| | Sbjct 2077944 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTCTATTGGTCAAGGAAGTT 2077885 Query 8702 TCTCTGATGGTA 8713 | ||||||| || Sbjct 2077884 TTTCTGATGCTA 2077873 >seq4 Length=49548238 Score = 214 bits (236), Expect = 2e-50 Identities = 239/318 (75%), Gaps = 1/318 (0%) Strand=Plus/Plus Query 8402 CTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACG 8461 |||| ||| | | || || ||||| || ||||||||||| || |||| | ||| | Sbjct 24272523 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 24272582 Query 8462 CAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACA 8521 | || || | ||||| ||||| || |||||||| || ||| ||||||||||| | |||| Sbjct 24272583 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 24272642 Query 8522 ACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGG 8581 | || || ||||| |||| | ||| | |||||| | ||||| || | |||||||| Sbjct 24272643 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGG 24272702 Query 8582 GTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACT 8641 ||| ||| ||||||||| || ||| || || |||||||||||||| ||||||||| | Sbjct 24272703 GTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 24272762 Query 8642 CTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGT 8701 | ||||||||||| |||||| ||||||| ||| | | | ||| |||||||||| | Sbjct 24272763 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTT 24272822 Query 8702 TCTCTGATGGTAT-GCCT 8718 | ||||||| ||| |||| Sbjct 24272823 TTTCTGATGCTATAGCCT 24272840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516427138272000