Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq9 116 2e-20 seq6 107 1e-17 seq2 105 4e-17 seq3 100 2e-15 seq4 91.5 1e-12 seq211 89.7 3e-12 seq7 89.7 3e-12 seq1 89.7 3e-12 >seq9 Length=72259479 Score = 116 bits (128), Expect = 2e-20 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| || || || |||||||| || | || ||||||||||||| Sbjct 1714288 ATGCTGTGGTCACTGTTCCTGCTTACTTCAATGATTCCCAGAGGCAGGCAACTAAAGATG 1714229 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 |||| ||||| ||||| ||||| | ||||| || ||||||||| | || || ||| Sbjct 1714228 CGGGTGTTATTGCCGGTCTCAATGTCATGCGTATCATCAATGAACCAGCTGCTGCTGCAA 1714169 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||||||||| ||||| Sbjct 1714168 TTGCCTATGGTCTTGACAAGAA 1714147 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| ||||||||||| || ||||| |||||| |||| ||||| || || || ||||| Sbjct 12449376 GCAGTGATTACTGTTCCTGCTTATTTCAATGATGCTCAGCGTCAGGCCACAAAGGATGCT 12449435 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| ||||| | || || |||||||||||||| || || || Sbjct 12449436 GGCCGCATTGCTGGCCTTGATGTTGAGAGGATCATCAATGAACCAACAGCTGCTGCTCTG 12449495 Query 474857 GCTTATGG 474864 ||||||| Sbjct 12449496 TCTTATGG 12449503 >seq6 Length=48101398 Score = 107 bits (118), Expect = 1e-17 Identities = 125/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 321744 TCAATATTATGTTCCGTAACAATTTCATCAAATGTAAGATTTTTTGCAATAATTAATGGT 321803 ||||| |||| | || || ||||| | |||| |||||| |||||| | ||||| Sbjct 3522121 TCAATGTTATATGGAGTGACTGTTTCAGGATATGTCAGATTTAAAGCAATACTCCATGGT 3522180 Query 321804 AAACCAACTTCATTCAGTGCA-ATATTTGGATCAGATGTGATAACTGTACGACCAGACAT 321862 | || | ||||| || || ||||||||||| | ||||||||| ||||| | || | Sbjct 3522181 ACTCCCAGTTCAT-CAATGTTTATATTTGGATCTGGTGTGATAACAGTACGGGCCGAGAA 3522239 Query 321863 ATCAACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTTT 321908 ||||||||| || ||||| | |||||||||||| || ||||||||| Sbjct 3522240 ATCAACACGCTTGCCCATCAAATTTCCTCTAATCCGGCCTTCTTTT 3522285 >seq2 Length=61504503 Score = 105 bits (116), Expect = 4e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| || |||||||||||||| || |||||| |||| ||||| || || |||||||| Sbjct 47322819 GCAGTGATCACTGTTCCAGCATACTTCAATGATGCTCAGCGTCAGGCCACAAAAGATGCA 47322878 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || |||| || || ||| | ||| | | || || ||||| || ||||||||||| ||| Sbjct 47322879 GGCCGAATCGCTGGCCTTGAGGTTGAAAGGATCATCAATGAGCCGACAGCAGCCGCTCTT 47322938 Query 474857 GCTTATGG 474864 | ||||| Sbjct 47322939 TCCTATGG 47322946 >seq3 Length=64463019 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| | || || |||||||| || |||||||| ||| | |||||| |||||||| Sbjct 4437436 GCAGTGGTCACAGTCCCAGCATACTTCAATGATTCACAAAGGACAGCAACAAAAGATGCT 4437495 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | |||||||| || | ||| | |||||||| ||||||||||| || || || | Sbjct 4437496 GGCCGTATTGCAGGGCTGGAAGTTCTTCGTATTATAAATGAACCAACTGCTGCATCATTG 4437555 Query 474857 GCTTATGGTCTTGATAAGAA 474876 || |||||| | || ||||| Sbjct 4437556 GCCTATGGTTTCGAGAAGAA 4437575 >seq4 Length=49548238 Score = 91.5 bits (100), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || |||||||| || || || || || || || || || || ||||| || || Sbjct 2204860 CGCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCGAGGGTG 2204801 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| || || ||||| |||||||| || || | || || ||||||||||| ||| Sbjct 2204800 CGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCT 2204741 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| || ||||| ||||| ||||| || || | | | || ||| Sbjct 2204740 TCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATTGTGTCCGAGGACTCAACCTCGAGG 2204681 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || |||||||| |||||||| || || || Sbjct 2204680 GTGATGGTCTTGCCGGTGAGGGTCTTAACAAATATCTG 2204643 >seq211 Length=21435 Score = 89.7 bits (98), Expect = 3e-12 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || ||||||||||| ||| ||| || || || || || || | || | Sbjct 1729 AGACGCAGGACAAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCTGCCAATGTGCGC 1670 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || || ||||| |||||||| ||||| || || || || || || || |||||| Sbjct 1669 CCATCCTCGAGCTGCTTCCCAGCAAAGATAAGCCGCTGCTGGTCTGGTGGGATGCCTTCC 1610 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGT 480733 ||||| || ||||| || || ||||| || || | | | | || |||||| || Sbjct 1609 TTGTCCTGGATCTTGGCCTTAACGTTGTCAATCGTGTCTGAGCTCTCAA-CTTCAAGTGT 1551 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| ||||| || ||||| || Sbjct 1550 GATGGTCTTTCCAGTGAGGGTCTTGACAAAAATCTG 1515 >seq7 Length=46770411 Score = 89.7 bits (98), Expect = 3e-12 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || ||||||||||| ||| ||| || || || || || || | || | Sbjct 21030842 AGACGCAGGACAAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCTGCCAATGTGCGC 21030901 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || || ||||| |||||||| ||||| || || || || || || || |||||| Sbjct 21030902 CCATCCTCGAGCTGCTTCCCAGCAAAGATAAGCCGCTGCTGGTCTGGTGGGATGCCTTCC 21030961 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGT 480733 ||||| || ||||| || || ||||| || || | | | | || |||||| || Sbjct 21030962 TTGTCCTGGATCTTGGCCTTAACGTTGTCAATCGTGTCTGAGCTCTCAA-CTTCAAGTGT 21031020 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| ||||| || ||||| || Sbjct 21031021 GATGGTCTTTCCAGTGAGGGTCTTGACAAAAATCTG 21031056 >seq1 Length=61571842 Score = 89.7 bits (98), Expect = 3e-12 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || ||||||||||| ||| ||| || || || || || || | || | Sbjct 52871868 AGACGCAGGACAAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCTGCCAATGTGCGC 52871927 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || || ||||| |||||||| ||||| || || || || || || || |||||| Sbjct 52871928 CCATCCTCGAGCTGCTTCCCAGCAAAGATAAGCCGCTGCTGGTCTGGTGGGATGCCTTCC 52871987 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGT 480733 ||||| || ||||| || || ||||| || || | | | | || |||||| || Sbjct 52871988 TTGTCCTGGATCTTGGCCTTAACGTTGTCAATCGTGTCTGAGCTCTCAA-CTTCAAGTGT 52872046 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| ||||| || ||||| || Sbjct 52872047 GATGGTCTTTCCAGTGAGGGTCTTGACAAAAATCTG 52872082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267827976951824