Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq2 255 6e-63 seq4 196 5e-45 seq8 96.9 4e-15 seq7 93.3 5e-14 seq6 84.2 2e-11 seq2151 82.4 8e-11 >seq2 Length=61504503 Score = 255 bits (282), Expect = 6e-63 Identities = 340/470 (72%), Gaps = 7/470 (1%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || || |||||| | || |||||||| ||||| ||||| | || |||||||| || || Sbjct 2078343 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 2078284 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994 ||||| || ||| | | || || | ||| || || || || ||| | | ||| || Sbjct 2078283 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 2078225 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 || || || || || || |||||||| || || ||||||| | | ||||||||||| Sbjct 2078224 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 2078165 Query 161055 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 161114 || ||||||||||| |||| ||| ||||| || ||||| ||||||| ||||| || Sbjct 2078164 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 2078105 Query 161115 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 161174 |||||||| ||| | | || || ||| | ||||| || || |||| | || |||| Sbjct 2078104 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 2078045 Query 161175 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 161234 | |||||| | |||| | | ||| ||||||||||||||||||||| || ||| Sbjct 2078044 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 2077985 Query 161235 TCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 161294 |||||| ||||||||||||||| || ||||| || |||||||| || || || | ||| Sbjct 2077984 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 2077925 Query 161295 AGTGTTCCTGGT-----CTATCCTTTCGGTCAAGGTTCTTTCTCTGATGC 161339 || ||| || | |||| || | |||||||| ||| |||||||| Sbjct 2077924 TGTTTTCTTGATTGACCCTATTCTATTGGTCAAGGAAGTTTTTCTGATGC 2077875 Score = 120 bits (132), Expect = 3e-22 Identities = 125/163 (77%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | ||||||||| | ||| ||||||||||||||| | || ||||| || Sbjct 2076789 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGC 2076848 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || ||||| ||||||| | ||| | ||||||||| |||| ||||||||||| Sbjct 2076849 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 2076908 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCT-ATCTT 162278 || || ||||||||| || ||| | || ||||||| ||||| Sbjct 2076909 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTAATCTT 2076951 >seq4 Length=49548238 Score = 196 bits (216), Expect = 5e-45 Identities = 235/318 (74%), Gaps = 1/318 (0%) Strand=Plus/Plus Query 161030 CTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACG 161089 ||||||| | | ||||||||||| || ||||||||||| |||| ||| ||||| | Sbjct 24272523 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 24272582 Query 161090 CTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACA 161149 | ||||| ||||||| ||||| || |||||||| ||| | | || || ||| | |||| Sbjct 24272583 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 24272642 Query 161150 ACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGG 161209 | || || |||| | || |||| | |||||| | |||| | | ||| |||| Sbjct 24272643 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGG 24272702 Query 161210 GTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACT 161269 ||| ||||||||||||| || ||||||||| ||||||||||||||| || ||||| | Sbjct 24272703 GTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 24272762 Query 161270 CTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTT 161329 | |||||||| || || || | ||| || ||| || | | ||| | |||||||| || Sbjct 24272763 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTT 24272822 Query 161330 TCTCTGATGCAAT-GCCT 161346 | |||||||| || |||| Sbjct 24272823 TTTCTGATGCTATAGCCT 24272840 Score = 109 bits (120), Expect = 6e-19 Identities = 124/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | ||||||||| | ||| |||| |||||||||| | || ||||| || Sbjct 21863120 TTTGATATTATGGACGACTGGTTACGAAGGGACCTTTTCGTTTTTATAGGATGGTCCGGC 21863061 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTT-GGGGGTTGGCTTACTGGGACTACTTT 162235 || | || ||||| ||||||| | ||| | ||||||||| |||| ||||||||||| Sbjct 21863060 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAAGGGGGTTGGTTTACAGGGACTACTTT 21863001 Query 162236 CGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCT-ATCTT 162278 || || ||||||||| || ||| | || ||||||| ||||| Sbjct 21863000 TGTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTAATCTT 21862957 >seq8 Length=47074253 Score = 96.9 bits (106), Expect = 4e-15 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || ||||||||| | | |||||||| ||||| ||||| | || ||||| || || || Sbjct 5860715 TTCTGTAACTGGATAAGTAGCACCGAAAACCGTCTTTACATCGGATGGTTAGGTGTTTTG 5860656 Query 160936 ATGATTCC---CTGCTTGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCT 160992 ||||| || || ||| ||| || || | | | | ||| |||||| | | |||| Sbjct 5860655 ATGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATC---GCCTTCATCGCTGCT 5860599 Query 160993 CCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAAC 161052 || || || || || || || |||||||| || || |||||| | | |||||||| Sbjct 5860598 CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTACTTTATGGAAAT 5860539 Query 161053 AACATCATCTCTGGTGCTGTTAT 161075 || || ||||||||||| |||| Sbjct 5860538 AATATTGTCTCTGGTGCTATTAT 5860516 >seq7 Length=46770411 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||||||||||||| ||| |||||| |||| | ||| ||||||| ||| Sbjct 26526110 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTGCAAAATGTCACAGGTTCAAAT 26526051 Query 157751 CCTGTCACCCCGACTTATCAA 157771 ||||||| ||| || ||| || Sbjct 26526050 CCTGTCATCCCTACCTATTAA 26526030 >seq6 Length=48101398 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 158332 GACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGC 158391 |||||| ||||||||| ||| || ||||| | || |||| || ||||| ||| Sbjct 935658 GACGACGTGTACATCCTGGACCAGGCCGAGGAGGAAGGGATCGACCTGCCCTACTCCTGC 935717 Query 158392 CGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGC 158451 || || || | || || || || || || || ||||||| |||| ||| ||||| | Sbjct 935718 CGCGCGGGGTCCTGCTCCTCCTGCGCCGGCAAGGTCGTCTCCGGCAGCGTCGACCAGTCC 935777 Query 158452 GACCAGTCCTTCCTGGACGATGACCA 158477 |||||| |||||||||||| ||||| Sbjct 935778 GACCAGAGCTTCCTGGACGACGACCA 935803 >seq2151 Length=3468 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 161030 CTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACG 161089 ||||||| | | ||||||||||| || ||||||||||| |||| ||| ||||| | Sbjct 3366 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 3425 Query 161090 CTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCA 161127 | ||||| ||||||| ||||| || |||||||| ||| Sbjct 3426 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCA 3463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547691138074080