Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq2 244 3e-60 seq4 167 7e-37 seq8 107 6e-19 >seq2 Length=61504503 Score = 244 bits (270), Expect = 3e-60 Identities = 336/466 (72%), Gaps = 9/466 (2%) Strand=Plus/Plus Query 18352 TACCATCAGAGAAACTCCCTTGTCCAAAAGGATA------AACGAGAAATACTG-AGAAG 18404 || ||||||| ||||| ||||| |||| || ||| | | ||||| || | || || Sbjct 2077873 TAGCATCAGAAAAACTTCCTTGACCAATAGAATAGGGTCAATCAAGAAA-ACAGCAGTAG 2077931 Query 18405 GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAA 18464 ||||||| || || || ||||| |||||| |||||| || |||||||| || | || Sbjct 2077932 -CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 2077990 Query 18465 CTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATG 18524 ||||||||||| | || ||||| ||| || | || | | ||||| | ||||| Sbjct 2077991 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 2078050 Query 18525 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 18584 || | ||| || || || || ||||||||||| || | | |||||||||||| |||||| Sbjct 2078051 AGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGG 2078110 Query 18585 TAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTT 18644 || ||||| | ||||| || ||| | || | || || || || || || |||||| Sbjct 2078111 TAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTT 2078170 Query 18645 CCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCA 18704 ||||| ||||| | || || |||||||||||||||||||| || || || ||||| ||| Sbjct 2078171 CCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCA 2078230 Query 18705 GCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACC 18764 || | || || || | |||| | | || |||||| || | | ||||||||| | || Sbjct 2078231 GCGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACA 2078290 Query 18765 CCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGT 18810 || ||||| || | ||| || ||||| | || || || | ||||| Sbjct 2078291 CCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGT 2078336 >seq4 Length=49548238 Score = 167 bits (184), Expect = 7e-37 Identities = 228/312 (73%), Gaps = 5/312 (2%) Strand=Plus/Minus Query 18347 AGGC-ATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAA 18403 |||| ||| ||||||| ||||| ||||| |||| ||| | || | ||||| || | || | Sbjct 24272840 AGGCTATAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAA-ACAGCAGTA 24272782 Query 18404 GGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATA 18463 | ||||||| || || || ||||| |||||| |||||| || |||||||| || | | Sbjct 24272781 G-CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAA 24272723 Query 18464 ACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAAT 18523 |||||||||||| | | ||||| ||| || | || | | ||||| | ||||| Sbjct 24272722 ACTAAGTTCCCACTCATGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAAT 24272663 Query 18524 GAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGG 18583 || | ||| || || || || ||||||||||| || | | |||||||||||| ||||| Sbjct 24272662 TAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGG 24272603 Query 18584 GTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTT 18643 ||| ||||| | ||||| || ||| | || | || || || || || || ||||| Sbjct 24272602 GTAAAAGTGCAATCCGATCGCTGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTT 24272543 Query 18644 TCCATAGAGTAA 18655 |||||| ||||| Sbjct 24272542 TCCATAAAGTAA 24272531 >seq8 Length=47074253 Score = 107 bits (118), Expect = 6e-19 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 18636 ATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACG 18695 || || |||||||| ||||| | || | |||||||||||||||||||| || || || Sbjct 5860534 ATATTATTTCCATAAAGTAAAGAACCAAAAACAGGCTCACGAATACCATCAATATCTACT 5860593 Query 18696 GGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATC 18755 ||||||||||| | || || || | |||| | | || |||||| || | | ||||||| Sbjct 5860594 GGAGGAGCAGCGATGAAGGCGATAATAAATACGGAAGTTGCGGTCAATAAGGTAGGGATC 5860653 Query 18756 ATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACAT 18815 || | || || ||||| || | ||| || ||||| | || || | | ||||| ||| Sbjct 5860654 ATCAAAACACCTAACCATCCGATGTAAAGACGGTTTTCGGTGCTACTTATCCAGTTACAG 5860713 Query 18816 AA 18817 || Sbjct 5860714 AA 5860715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151303686933672