Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq2 232 8e-56 seq4 167 3e-36 >seq2 Length=61504503 Score = 232 bits (256), Expect = 8e-56 Identities = 355/499 (71%), Gaps = 9/499 (2%) Strand=Plus/Plus Query 103685 AAAGGCA-TAGCATCGGAGAACGAACCTTGACCAA-AG----GGGTAGACCAAGAATACT 103738 |||||| ||||||| || || |||||||||| || |||| | |||||| || Sbjct 2077865 AAAGGCTGTAGCATCAGAAAAACTTCCTTGACCAATAGAATAGGGTCAATCAAGAAAACA 2077924 Query 103739 GCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGA 103798 || | ||||| ||||||||||| || ||||| ||| ||||| || ||||| |||||| Sbjct 2077925 GCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGA 2077984 Query 103799 CGGTAGGACAATTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAAT 103858 ||| | | |||||||||||| |||||||| | | |||| | |||||| | Sbjct 2077985 CGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGA 2078044 Query 103859 ACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAA 103918 || | || | |||| || || || || | ||||||||||| |||||| ||||||||| Sbjct 2078045 ACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAA 2078104 Query 103919 ATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATG 103978 || || || ||||| | || || || || | |||| || ||||||||||| || Sbjct 2078105 ATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATA 2078164 Query 103979 TTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGA 104038 ||||| || || | | ||||||| || || |||||||| || || ||||| || ||| Sbjct 2078165 TTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGA 2078224 Query 104039 GGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCAT 104097 || || || | |||||| | || || |||| ||||| | ||| | || |||||||| Sbjct 2078225 GGGGCAGCGATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCAT 2078283 Query 104098 CAGCACACCGAACCAACCAACATAGAGACGGTTGTTTGTCGATGTAACCCACTCGCAGAA 104157 || ||||||||||| || | || |||||||| | || || | ||| | |||||| Sbjct 2078284 CAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 2078343 Query 104158 GTTATCCCACGAGGATTGT 104176 | | ||||| ||| |||| Sbjct 2078344 GCGACCCCAC-AGGCTTGT 2078361 Score = 82.4 bits (90), Expect = 1e-10 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 102580 CCGTGGGTATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGA 102639 || ||||||||||| ||||| |||| || || || |||| ||| ||||| | |||| | Sbjct 2076931 CCATGGGTATACCAAGAAGTTACAAAAGTAGTCCCTGTAAACCAACCCCCTAAAGCGAAA 2076872 Query 102640 TAAGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTA 102699 |||||| ||||| || | ||| || ||||| || | ||| || || || || | | Sbjct 2076871 TAAGCACAAGGAAAGAGCAATAGGCCGGACCATCCTATAAAAACGAAACGGTCCCTTCGT 2076812 Query 102700 ATCCAGTCATCCAGGATGTCAAA 102722 | |||||| |||| || ||||| Sbjct 2076811 AACCAGTCGTCCATAATATCAAA 2076789 >seq4 Length=49548238 Score = 167 bits (184), Expect = 3e-36 Identities = 232/322 (72%), Gaps = 5/322 (2%) Strand=Plus/Minus Query 103685 AAAGGC-ATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGA 103743 |||||| |||||||| || || |||||||||| |||| | |||||| || || | Sbjct 24272842 AAAGGCTATAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGT 24272783 Query 103744 CGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTA 103803 ||||| ||||||||||| || ||||| ||| ||||| || ||||| ||||||||| | Sbjct 24272782 AGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAA 24272723 Query 103804 GGACAATTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTAC 103863 | |||||||||| | |||||||| | | |||| | |||||| | || | Sbjct 24272722 ACTAAGTTCCCACTCATGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAAT 24272663 Query 103864 AAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGG 103923 || | |||| || || || || | ||||||||||| |||||| ||||||||||| || Sbjct 24272662 TAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGG 24272603 Query 103924 ATAGAAGTGAAGACCAATTGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTG 103981 || ||||| | || || || || || || |||| || ||||||||||| || ||| Sbjct 24272602 GTAAAAGTGCAATCCGAT--CGCTGCAGAAGTAGGAATAATGGCACCAGAGATAATATTG 24272545 Query 103982 TTACCGTACATGAGTGAACCAG 104003 || || || | | ||||||| Sbjct 24272544 TTTCCATAAAGTAAAGAACCAG 24272523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633448759883040