Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq2 201 3e-47 seq4 158 4e-34 seq6 82.4 2e-11 >seq2 Length=61504503 Score = 201 bits (222), Expect = 3e-47 Identities = 313/445 (70%), Gaps = 7/445 (2%) Strand=Plus/Plus Query 21988 TAGCATCAGAAAAAGAGCCCTGTCCAAACGGATA-----AACAAGGAACACAGCAGTCGC 22042 |||||||||||||| || || |||| | ||| || | ||| |||||||| || Sbjct 2077873 TAGCATCAGAAAAACTTCCTTGACCAATAGAATAGGGTCAATCAAGAAAACAGCAGTAGC 2077932 Query 22043 AGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCT 22102 ||| || |||||||| || || |||||| ||||| || | ||| || || || | || Sbjct 2077933 AGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACT 2077992 Query 22103 AAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAG 22162 |||||||||||| || ||||| ||| | || |||| | |||||| | || | || Sbjct 2077993 AAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAG 2078052 Query 22163 TTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTA 22222 | | || ||||| ||||| | ||| ||||||| | |||||||||||||||||||| Sbjct 2078053 CTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTA 2078112 Query 22223 GAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACC 22282 ||||| | |||||| || | | |||| | ||| || || || || ||||| || Sbjct 2078113 AAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCC 2078172 Query 22283 ATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCC 22342 ||| | | || |||| || || || || || ||||| || || || || || || | Sbjct 2078173 ATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGC 2078232 Query 22343 AACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTC 22401 | || ||||||||||| || || |||| ||| ||| | || ||||| | || | Sbjct 2078233 GATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACAC 2078291 Query 22402 CGAACCATCCTACATAAAGACGGTT 22426 |||||||||| | ||||||||||| Sbjct 2078292 CGAACCATCCGATGTAAAGACGGTT 2078316 >seq4 Length=49548238 Score = 158 bits (174), Expect = 4e-34 Identities = 218/305 (71%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 21981 AAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTC 22040 |||| ||||||||||||||| || || |||| || | || | ||| |||||||| Sbjct 24272841 AAGGCTATAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTA 24272782 Query 22041 GCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAG 22100 ||||| || |||||||| || || |||||| ||||| || | ||| || || || | Sbjct 24272781 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 24272722 Query 22101 CTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTG 22160 |||||||||||||| | ||||| ||| | || |||| | |||||| | || | Sbjct 24272721 CTAAGTTCCCACTCATGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 24272662 Query 22161 AGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGG 22220 || | | || ||||| ||||| | ||| ||||||| | |||||||||||||||||| Sbjct 24272661 AGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGG 24272602 Query 22221 TAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTA 22280 || ||||| | |||||| || | | |||| | ||| || || || || ||||| Sbjct 24272601 TAAAAGTGCAATCCGATCGCTGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTT 24272542 Query 22281 CCATA 22285 ||||| Sbjct 24272541 CCATA 24272537 >seq6 Length=48101398 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 21696 CGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCA 21755 || || || || || ||||||||||||||||| | ||||||||||| ||||||||||| Sbjct 8141048 CGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCC 8140989 Query 21756 ACAATATTGTAAGTCTCT 21773 ||||| || |||||| || Sbjct 8140988 ACAATGTTATAAGTCCCT 8140971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146193783830640