Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1 107 1e-18 >seq1 Length=61571842 Score = 107 bits (118), Expect = 1e-18 Identities = 158/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||||||||| || |||||||||||||| || || | ||||| ||||||||||| | Sbjct 60058568 TACCTTTTCTCTTGCCTCCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTA 60058509 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||| ||||| | |||| | ||| ||| ||||| | |||| | || || | || Sbjct 60058508 GCATAGGAACAATTCCATTAGAAGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTC 60058449 Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242 ||| | |||| ||| | ||| ||||| ||||| |||| || || ||||| ||| Sbjct 60058448 GAATGTTGTGA-ATTGATACACCAATTCCTCCAGCAGATTTGCTTATCGCAGCACATTCT 60058390 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | ||||| ||||||| | || |||||| ||||||| Sbjct 60058389 GAGAGAGTATCATAAATTCCCTCAATACTATCATCTTTCAT 60058349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253014748822100