Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2 185 1e-41 seq4 159 4e-34 >seq2 Length=61504503 Score = 185 bits (204), Expect = 1e-41 Identities = 329/473 (70%), Gaps = 9/473 (2%) Strand=Plus/Plus Query 124566 TACCATCAGAGAATGAACCCTGACCAA----AT-GGGTATACTAAGAATACAGCGAATGC 124620 || ||||||| || || ||||||| || |||| | ||||| ||||| || Sbjct 2077873 TAGCATCAGAAAAACTTCCTTGACCAATAGAATAGGGTCAATCAAGAAAACAGCAGTAGC 2077932 Query 124621 AGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGA 124680 ||| | || || |||||||| |||||| |||||||||||||| || | | | | Sbjct 2077933 AGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACT 2077992 Query 124681 TAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAA 124740 |||||||||| | ||||| || | | ||||| | |||||| | || | | Sbjct 2077993 AAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAG 2078052 Query 124741 CTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTA 124800 || |||||| || ||||| || ||||| |||||||||| ||| |||||||| |||||||| Sbjct 2078053 CTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTA 2078112 Query 124801 GAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACC 124860 ||||| | |||||| || || | |||| || ||||||||||| || ||||| || Sbjct 2078113 AAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCC 2078172 Query 124861 ATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGC 124920 ||| | |||||||| | || || || | || || || ||||| || ||||| || || Sbjct 2078173 ATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGC 2078232 Query 124921 AATAAATGCAACGATGAA-ACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACAC 124979 || || || | || || ||| | | ||| || | |||| || ||||| | ||||| Sbjct 2078233 GATGAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACAC 2078291 Query 124980 CAAACCAACCAACATAAATTCTGTTGTTTGTTGAT-GTTACCCACTCACAGAA 125031 | ||||| || | |||| | ||| || | || | |||| ||| | ||||| Sbjct 2078292 CGAACCATCCGATGTAAAGACGGTT-TTCGGTGCTAGTTATCCAGTTGCAGAA 2078343 Score = 96.9 bits (106), Expect = 4e-15 Identities = 111/148 (75%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 123756 CAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTG 123815 |||| ||||| |||||||| || || || || ||||| ||| |||||||| || | | Sbjct 2076935 CAAT-CCATGGGTATACCAAGAAGTTACAAAAGTAGTCCCTGTAAACCAACCCCCTAAAG 2076877 Query 123816 ATAGATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTC 123875 | ||| |||||||| | || || || || ||||||||||| || || ||||| || | Sbjct 2076876 CGAAATAAGCACAAGGAAAGAGCAATAGGCCGGACCATCCTATAAAAACGAAACGGTCCC 2076817 Query 123876 TCTTTAACCAGTCGTCAAGAACATCAAA 123903 | |||||||||||| | || |||||| Sbjct 2076816 TTCGTAACCAGTCGTCCATAATATCAAA 2076789 >seq4 Length=49548238 Score = 159 bits (176), Expect = 4e-34 Identities = 222/311 (71%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 124565 ATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCA 124624 ||| ||||||| || || ||||||| |||| | ||||| ||||| ||||| Sbjct 24272835 ATAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAGCAGCT 24272776 Query 124625 GATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGT 124684 | || || |||||||| |||||| |||||||||||||| || | | | | ||| Sbjct 24272775 GCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGT 24272716 Query 124685 TCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGA 124744 ||||||| ||||| || | | ||||| | |||||| | || | | || | Sbjct 24272715 TCCCACTCATGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCA 24272656 Query 124745 TAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAG 124804 ||||| || ||||| || ||||| |||||||||| ||| |||||||| |||||||| ||| Sbjct 24272655 TAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAG 24272596 Query 124805 TGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATAT 124864 || | |||||| || || | |||| || ||||||||||| || ||||| ||||| Sbjct 24272595 TGCAATCCGATCGCTGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAA 24272536 Query 124865 AAGAAAGAACC 124875 | |||||||| Sbjct 24272535 AGTAAAGAACC 24272525 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 123756 CAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCG-ATT 123814 |||| ||||| |||||||| || || || || ||||| ||| |||||||| || | Sbjct 21862973 CAAT-CCATGGGTATACCAAGAAGTTACAAAAGTAGTCCCTGTAAACCAACCCCCTTAAA 21863031 Query 123815 GATAGATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCT 123874 | | ||| |||||||| | || || || || ||||||||||| || || ||| | || Sbjct 21863032 GCGAAATAAGCACAAGGAAAGAGCAATAGGCCGGACCATCCTATAAAAACGAAAAGGTCC 21863091 Query 123875 CTCTTTAACCAGTCGTCAAGAACATCAAA 123903 || |||||||||||| | || |||||| Sbjct 21863092 CTTCGTAACCAGTCGTCCATAATATCAAA 21863120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578939139513760