Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2 241 2e-58 seq4 156 6e-33 seq8 98.7 1e-15 >seq2 Length=61504503 Score = 241 bits (266), Expect = 2e-58 Identities = 322/445 (72%), Gaps = 7/445 (2%) Strand=Plus/Plus Query 27251 TAGCATCGGAGAAAGAACCTTGACCGAAAGGATAG-----ACGAGGAATACTGCACTCGC 27305 ||||||| || ||| |||||||| | || |||| | | ||| || ||| | || Sbjct 2077873 TAGCATCAGAAAAACTTCCTTGACCAATAGAATAGGGTCAATCAAGAAAACAGCAGTAGC 2077932 Query 27306 AGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAACGATATGA 27365 ||| || || ||||| |||||||| ||| ||||| ||||||||||| | ||| | Sbjct 2077933 AGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACT 2077992 Query 27366 GAGTTCCCACTCACGTCCCATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAG 27425 |||||||||||||| ||||||||| | | || | | |||||| | || | || Sbjct 2077993 AAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAG 2078052 Query 27426 TTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTA 27485 | |||| || || || || ||||||||||| | ||||| |||||||| |||||||| Sbjct 2078053 CTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTA 2078112 Query 27486 GAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCC 27545 ||||| | ||||| || ||| | || | || |||||||| || || ||||| || Sbjct 2078113 AAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCC 2078172 Query 27546 ATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGC 27605 ||| | | ||||||| ||| || ||||||||||| |||||||| || || || || || Sbjct 2078173 ATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGC 2078232 Query 27606 GATGAATGCGACAATGAA-GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACAC 27664 |||||| |||| ||| || |||| |||||| | || | || |||||||||| |||| Sbjct 2078233 GATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACAC 2078291 Query 27665 CGAACCAACCAACATACAAACGGTT 27689 ||||||| || | || | |||||| Sbjct 2078292 CGAACCATCCGATGTAAAGACGGTT 2078316 Score = 93.3 bits (102), Expect = 6e-14 Identities = 119/163 (73%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 24242 AAGAT-AGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAA 24300 ||||| |||||||||| | ||||||||| |||||| || ||||||| || || |||| Sbjct 2076951 AAGATTAGGAACTAGCCAATCCATGGGTATACCAAGAAGTTACAAAAGTAGTCCCTGTAA 2076892 Query 24301 GCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGAGTCCAGACCAACCCACAA 24360 |||||| || | || | ||||||| |||| || | || || ||||| || | || Sbjct 2076891 ACCAACCCCCTAAAGCGAAATAAGCACAAGGAAAGAGCAATAGGCCGGACCATCCTATAA 2076832 Query 24361 AGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAAA 24403 | || || || |||| | | ||||||||||| || ||||| Sbjct 2076831 AAACGAAACGGTCCCTTCGTAACCAGTCGTCCATAATATCAAA 2076789 >seq4 Length=49548238 Score = 156 bits (172), Expect = 6e-33 Identities = 226/318 (71%), Gaps = 1/318 (0%) Strand=Plus/Minus Query 27246 AGGC-ATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCG 27304 |||| |||||||| || ||| |||||||| | ||| | | | ||| || ||| | | Sbjct 24272840 AGGCTATAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAG 24272781 Query 27305 CAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAACGATATG 27364 |||| || || ||||| |||||||| ||| ||||| ||||||||||| | ||| | Sbjct 24272780 CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAAC 24272721 Query 27365 AGAGTTCCCACTCACGTCCCATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCA 27424 |||||||||||| | ||||||||| | | || | | |||||| | || | | Sbjct 24272720 TAAGTTCCCACTCATGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTA 24272661 Query 27425 GTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGT 27484 | | |||| || || || || ||||||||||| | ||||| |||||||| ||||||| Sbjct 24272660 GCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGT 24272601 Query 27485 AGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGC 27544 | ||||| | ||||| || ||| | || | || |||||||| || || ||||| | Sbjct 24272600 AAAAGTGCAATCCGATCGCTGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTC 24272541 Query 27545 CATACATAAGTGAACCAG 27562 |||| | | ||||||| Sbjct 24272540 CATAAAGTAAAGAACCAG 24272523 >seq8 Length=47074253 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 27523 GCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCG 27582 |||||||| | || || || ||||| | | |||||| ||| || ||||||||||| Sbjct 5860522 GCACCAGAGACAATATTATTTCCATAAAGTAAAGAACCAAAAACAGGCTCACGAATACCA 5860581 Query 27583 TCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAGCAGACAGTTGCTGCTAAC 27642 |||||||| || || || || |||||||| |||| ||| || | |||||| | || Sbjct 5860582 TCAATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAATACGGAAGTTGCGGTCAAT 5860641 Query 27643 AGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTT 27689 | || |||||||||| ||||| ||||| || | || | |||||| Sbjct 5860642 AAGGTAGGGATCATCAAAACACCTAACCATCCGATGTAAAGACGGTT 5860688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665426286648160