Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq7 118 1e-21 seq4 118 1e-21 >seq7 Length=46770411 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| | || || || || || ||||| ||||||||||| || || || Sbjct 35944791 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 35944732 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| || || |||||| || || Sbjct 35944731 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAACGA 35944672 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| |||||| Sbjct 35944671 GCTCATCTCCCGCGACGAGGGCCTCCAC 35944644 >seq4 Length=49548238 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| | || || || || || ||||| ||||||||||| || || || Sbjct 42842420 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTTGAGGGCATCTTCTTCTCGGGCTCCTT 42842361 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| ||||| |||||| || || Sbjct 42842360 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 42842301 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| || ||| Sbjct 42842300 GCTCATCTCCCGCGACGAGGGCCTGCAC 42842273 Score = 114 bits (126), Expect = 2e-20 Identities = 218/322 (68%), Gaps = 12/322 (4%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||||||||||||| || || || | || ||| || || || || ||||| Sbjct 528126 GGTGCCAAGATCCCCAAGGGATGTCTCCTGGTCGGCCCGCCCGGGACAGGTAAAACCCTG 528185 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 ||||| || ||| |||| ||||| | || || ||| || ||| | || || | Sbjct 528186 CTCGCGCGTGCCGTCGCTGGTGAGGCCGGGGTACCCTTCTTCTCCTGCGCGGCGTCAGAG 528245 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | || || ||||| |||||| ||||| ||||| || || || | ||| Sbjct 528246 TTCGTCGAGCTCTTCGTCGGTGTCGGTGCCTCCAGGGTGCGCGACCTTTTCGAGAAGGCC 528305 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG- 175514 | || || || ||||||||||| |||||||||||||| || || | ||| || Sbjct 528306 AAGGCCAAGGCGCCCTGCATTGTCTTCATCGATGAGATTGATGCTGTCGGGAGGCAGCGT 528365 Query 175515 -----CAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 | || ||||||| | || |||||||| || || || ||||| || || Sbjct 528366 GGTGCCGGCCTTGGTGGT------GGTAACGACGAGAGGGAGCAGACCATTAACCAGCTC 528419 Query 175570 CTCACCGAGATGGATGGCTTTG 175591 | || |||||||||||||||| Sbjct 528420 TTGACGGAGATGGATGGCTTTG 528441 Score = 105 bits (116), Expect = 8e-18 Identities = 192/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||||||||| ||||| | ||||| ||||| || | | ||| Sbjct 3676632 TTTGTGGAGATGTTTGTTGGTGTTGGTGCTTCCCGAGTTCGTGATCTTTTCAAGAAGGCC 3676691 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 3676692 AAGGAGAATGCTCCTTGCATAGTGTTTGTTGATGAAATTGATGCTGTTGGTAGGCAAAGA 3676751 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | |||||| || || || || || | || ||||| | || Sbjct 3676752 GGTACAGGTATTGGTGGTGGAAATGATGAAAGGGAGCAGACTCTCAACCAACTGTTGACT 3676811 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 || |||||||| ||||| | ||||| ||| | |||||||| |||||||| || | Sbjct 3676812 GAAATGGATGGTTTTGAGGGAAACACTGGAATTATTGTTATTGCTGCCACTAACCGAGCT 3676871 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 || ||| | ||| ||| | ||| | || || || ||||| Sbjct 3676872 GACATCTTGGATTCCGCTTTACTTAGGCCTGGACGCTTTGA 3676912 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 75186 |||||| |||| || |||||||| |||| || ||||||| | || |||| || Sbjct 46296244 GGGACTTCGATTATGACTACTTTGGCTTCAAGACTCTTGAGAGGTCTTACCTCTTGAA-- 46296187 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 ||| | || | | | |||| ||||| ||||| | ||| |||| || | || || Sbjct 46296186 GCTTGCGGGGAAGGTTGTTGAAAGGCCACAACACATGCTAATGAGGGTTTCAGTGGGAAT 46296127 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| |||||||||||| |||| | | |||||||| | ||||| || | ||| Sbjct 46296126 ACACAAGGAAGACATTGAGTCTGCCATAAAGACATACCATCTCATGTCTCAGCGCTGGTT 46296067 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | || || |||| ||||| ||||||||||| |||||||| || || Sbjct 46296066 TACACATGCCTCACCGACCCTTTTCAATGCTGGCACACCAAGGCCCCA 46296019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596508541101440